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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1451-RA through 18771 annotations produced 1 hits



adenomatous polyposis coli (Apc):

Annotation Number : CG1451
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015589
Gbrowse : chr3R:24658021-24670372 (-) // 100.0 //
Probeset : 1628548_at
Accessions : protein= NP_477152;, nucleotide= NM_057804;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from sequen
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0015589.
Homophila reports that CG1451 is a close match (6e-117) to human gene APC;BTPS2;FPC;GS (NP_000029), a gene associated with Adenoma, periampullary (3);Adenomatous polyposis coli, 175100 (3);Brain tumor-polyposis syndrome 2 (3);Colorectal cancer, somatic, 114500 (3);Desmoid disease, hereditary, 135290 (3);Gardner syndrome (3);Gastric cancer, somatic, 137215 (3);Hepatoblastoma (3).
BioGrid reports that CG1451 interacts with CG11579 CG2621 CG6193 CG6193 CG6193 CG6193 CG6193 CG6193 CG6193 CG6193 CG6193 CG6193 CG17964 .
TRiP has 2 RNAi stocks for FBgn0015589 available for purchase.
VDRC has 3 RNAi stocks for FBgn0015589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain916 274 of 4 5.00Up
Head303 224 of 4 1.70Up
Eye174 194 of 4 0.96None
Thoracicoabdominal ganglion768 154 of 4 4.20Up
Salivary gland191 44 of 4 1.05None
Crop191 154 of 4 1.00None
Midgut257 54 of 4 1.40Up
Tubule296 254 of 4 1.60Up
Hindgut190 94 of 4 1.00None
Heart148 104 of 4 0.81None
Fat body200 264 of 4 1.10None
Ovary483 84 of 4 2.70Up
Testis96 34 of 4 0.50Down
Male accessory glands146 54 of 4 0.80Down
Virgin spermatheca295 134 of 4 1.62Up
Mated spermatheca269 94 of 4 1.48Up
Adult carcass132 54 of 4 0.70Down
Larval CNS763 654 of 4 4.19Up
Larval Salivary gland263 154 of 4 1.44Up
Larval midgut201 84 of 4 1.11None
Larval tubule307 34 of 4 1.70Up
Larval hindgut267 54 of 4 1.47Up
Larval fat body238 54 of 4 1.30Up
Larval trachea244 244 of 4 1.34Up
Larval carcass219 114 of 4 1.21None
S2 cells (growing)627 234 of 4 3.44Up
Whole fly182 104 of 4

Looking for CG1451-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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