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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14517-RA through 18771 annotations produced 1 hits



chr3R:24858669-24859730 (-) // 100.0 // (beta4GalNAcTB):

Annotation Number : CG14517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637032_at
Accessions : protein= , nucleotide= NP_651657;
Pathway : 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006044 // N-acetylglucosamine meta
Interpro : 0005794 // Golgi apparatus // inferred from direct assay
FlyMine data for full length.
Homophila reports that CG14517 is a close match (2e-24) to human gene B4GALT7;XGALT1;XGPT1 (NP_009186), a gene associated with Ehlers-Danlos syndrome, progeroid form, 130070 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 34 of 4 1.10None
Head45 ± 24 of 4 0.60Down
Eye45 ± 34 of 4 0.55Down
Thoracicoabdominal ganglion112 ± 34 of 4 1.40Up
Salivary gland153 ± 104 of 4 1.85Up
Crop96 ± 24 of 4 1.20None
Midgut171 ± 114 of 4 2.10Up
Tubule66 ± 04 of 4 0.80Down
Hindgut102 ± 64 of 4 1.20None
Heart74 ± 44 of 4 0.89None
Fat body31 ± 74 of 4 0.38Down
Ovary129 ± 44 of 4 1.60Up
Testis19 ± 14 of 4 0.20Down
Male accessory glands148 ± 14 of 4 1.80Up
Virgin spermatheca26 ± 24 of 4 0.32Down
Mated spermatheca29 ± 14 of 4 0.35Down
Adult carcass45 ± 34 of 4 0.60Down
Larval CNS127 ± 154 of 4 1.53Up
Larval Salivary gland191 ± 154 of 4 2.30Up
Larval midgut212 ± 74 of 4 2.56Up
Larval tubule283 ± 104 of 4 3.40Up
Larval hindgut203 ± 54 of 4 2.45Up
Larval fat body46 ± 24 of 4 0.60Down
Larval trachea179 ± 114 of 4 2.16Up
Larval carcass137 ± 74 of 4 1.65Up
S2 cells (growing)184 ± 24 of 4 2.23Up
Whole fly83 ± 74 of 4

Looking for CG14517-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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