FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14519-RA through 18771 annotations produced 1 hits

(CG14519):

Annotation Number : CG14519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039619
Gbrowse : chr3R:24816954-24817305 (+) // 100.0 //
Probeset : 1625647_at
Accessions : protein= NP_651651;, nucleotide= NM_143394;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039619.
BioGrid reports that CG14519 interacts with CG4822 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	4.60	None
Head	2 ± 1	0 of 4	3.30	None
Eye	4 ± 1	0 of 4	7.33	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	2.00	None
Salivary gland	8 ± 4	0 of 4	13.04	None
Crop	1 ± 0	0 of 4	2.60	None
Midgut	4 ± 2	0 of 4	6.00	None
Tubule	1 ± 0	0 of 4	1.60	None
Hindgut	1 ± 0	0 of 4	1.90	None
Heart	1 ± 0	0 of 4	1.48	None
Fat body	2 ± 2	0 of 4	3.74	None
Ovary	1 ± 0	0 of 4	1.70	None
Testis	0 ± 0	0 of 4	0.70	None
Male accessory glands	4 ± 2	0 of 4	7.20	None
Virgin spermatheca	1 ± 0	0 of 4	1.56	None
Mated spermatheca	1 ± 0	0 of 4	1.52	None
Adult carcass	1 ± 0	0 of 4	2.70	None
Larval CNS	3 ± 2	0 of 4	5.44	None
Larval Salivary gland	2 ± 0	0 of 4	4.22	Up
Larval midgut	7 ± 1	0 of 4	10.85	Up
Larval tubule	1 ± 0	0 of 4	2.00	None
Larval hindgut	1 ± 0	0 of 4	2.19	Up
Larval fat body	2 ± 1	0 of 4	3.00	None
Larval trachea	1 ± 1	0 of 4	2.63	None
Larval carcass	2 ± 0	0 of 4	3.26	None
S2 cells (growing)	3 ± 0	0 of 4	5.30	None
Whole fly	0 ± 0	0 of 4

Looking for CG14519-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720