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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14521-RA through 18771 annotations produced 1 hits



(CG14521):

Annotation Number : CG14521
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039617
Gbrowse : chr3R:24750720-24796076 (-) // 99.87 //
Probeset : 1629994_at
Accessions : protein= NP_651649;, nucleotide= NM_143392;
FlyMine data for FBgn0039617.
BDGP gene expression has embryonic in situ data for CG14521: 13 pix of staining in 4 body parts.
Homophila reports that CG14521 is a close match (2e-12) to human gene MUSK (NP_005583), a gene associated with Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency, 608931 (3).
BioGrid reports that CG14521 interacts with CG3114 .
VDRC has 1 RNAi stocks for FBgn0039617 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain195 ± 24 of 430.60Up
Head39 ± 44 of 4 6.20Up
Eye4 ± 21 of 4 0.77None
Thoracicoabdominal ganglion193 ± 64 of 430.30Up
Salivary gland14 ± 40 of 4 2.31None
Crop3 ± 10 of 4 0.60None
Midgut2 ± 00 of 4 0.30Down
Tubule5 ± 00 of 4 0.80Down
Hindgut2 ± 00 of 4 0.30Down
Heart3 ± 00 of 4 0.61None
Fat body5 ± 30 of 4 0.83None
Ovary4 ± 10 of 4 0.60None
Testis2 ± 00 of 4 0.40Down
Male accessory glands13 ± 40 of 4 2.00None
Virgin spermatheca5 ± 00 of 4 0.79None
Mated spermatheca4 ± 20 of 4 0.64None
Adult carcass5 ± 10 of 4 0.80None
Larval CNS56 ± 44 of 4 8.86Up
Larval Salivary gland7 ± 20 of 4 1.24None
Larval midgut4 ± 10 of 4 0.74None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut3 ± 00 of 4 0.54None
Larval fat body3 ± 00 of 4 0.50None
Larval trachea2 ± 00 of 4 0.32Down
Larval carcass2 ± 00 of 4 0.46Down
S2 cells (growing)4 ± 00 of 4 0.68None
Whole fly6 ± 11 of 4

Looking for CG14521-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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