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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14523-RA through 18771 annotations produced 1 hits



(CG14523):

Annotation Number : CG14523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039612
Gbrowse : chr3R:24703735-24705963 (-) // 100.0 //
Probeset : 1641192_at
Accessions : protein= NP_651644;, nucleotide= NM_143387;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039612.
Homophila reports that CG14523 is a close match (9e-13) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 2 RNAi stocks for FBgn0039612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 11 of 4 0.60Down
Head66 ± 54 of 4 4.40Up
Eye20 ± 24 of 4 1.37None
Thoracicoabdominal ganglion7 ± 10 of 4 0.50Down
Salivary gland7 ± 20 of 4 0.50Down
Crop7 ± 10 of 4 0.50Down
Midgut8 ± 10 of 4 0.60Down
Tubule7 ± 00 of 4 0.50Down
Hindgut8 ± 11 of 4 0.60Down
Heart130 ± 24 of 4 8.61Up
Fat body74 ± 64 of 4 4.93Up
Ovary2 ± 10 of 4 0.10Down
Testis4 ± 11 of 4 0.30Down
Male accessory glands6 ± 20 of 4 0.40Down
Virgin spermatheca76 ± 74 of 4 5.07Up
Mated spermatheca63 ± 24 of 4 4.17Up
Adult carcass76 ± 74 of 4 5.00Up
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.20Down
Larval midgut2 ± 00 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut9 ± 02 of 4 0.63Down
Larval fat body128 ± 134 of 4 8.50Up
Larval trachea16 ± 20 of 4 1.09None
Larval carcass34 ± 44 of 4 2.26Up
S2 cells (growing)544 ± 164 of 435.87Up
Whole fly15 ± 14 of 4

Looking for CG14523-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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