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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14526-RA through 18771 annotations produced 1 hits



(CG14526):

Annotation Number : CG14526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027578
Gbrowse : chr3R:24709424-24711740 (+) // 100.0 //
Probeset : 1628258_at
Accessions : protein= NP_651646;, nucleotide= NM_143389;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0027578.
BDGP gene expression has embryonic in situ data for BcDNA:GH07188: 4 pix of staining in 1 body parts.
Homophila reports that CG14526 is a close match (1e-30) to human gene KEL (NP_000411), a gene associated with [Blood group, Kell] (3).
VDRC has 3 RNAi stocks for FBgn0027578 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 34 of 4 0.20Down
Head756 ± 744 of 4 5.00Up
Eye303 ± 534 of 4 1.99None
Thoracicoabdominal ganglion32 ± 14 of 4 0.20Down
Salivary gland541 ± 1204 of 4 3.55Up
Crop16 ± 03 of 4 0.10Down
Midgut7 ± 10 of 4 0.00Down
Tubule20 ± 22 of 4 0.10Down
Hindgut59 ± 34 of 4 0.40Down
Heart869 ± 504 of 4 5.70Up
Fat body1787 ± 904 of 411.72Up
Ovary14 ± 14 of 4 0.10Down
Testis7 ± 11 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca2867 ± 624 of 418.80Up
Mated spermatheca2268 ± 954 of 414.87Up
Adult carcass832 ± 654 of 4 5.50Up
Larval CNS6 ± 11 of 4 0.05Down
Larval Salivary gland32 ± 33 of 4 0.21Down
Larval midgut36 ± 73 of 4 0.24Down
Larval tubule12 ± 11 of 4 0.10Down
Larval hindgut63 ± 44 of 4 0.41Down
Larval fat body3709 ± 3404 of 424.30Up
Larval trachea39 ± 94 of 4 0.26Down
Larval carcass59 ± 44 of 4 0.39Down
S2 cells (growing)694 ± 144 of 4 4.55Up
Whole fly152 ± 114 of 4

Looking for CG14526-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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