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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14535-RA through 18771 annotations produced 1 hits



(CG14535):

Annotation Number : CG14535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031955
Gbrowse : chr2L:7846817-7853301 (-) // 100.0 //
Probeset : 1624761_at
Accessions : protein= NP_609156;, nucleotide= NM_135312;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0031955.
VDRC has 1 RNAi stocks for FBgn0031955 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 13 of 4 4.80Up
Head3 ± 10 of 4 0.80None
Eye1 ± 10 of 4 0.48None
Thoracicoabdominal ganglion12 ± 21 of 4 3.50Up
Salivary gland3 ± 10 of 4 0.90None
Crop4 ± 00 of 4 1.10None
Midgut2 ± 00 of 4 0.70None
Tubule0 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.40None
Heart0 ± 00 of 4 0.24None
Fat body3 ± 20 of 4 1.03None
Ovary0 ± 00 of 4 0.20None
Testis2 ± 00 of 4 0.60None
Male accessory glands0 ± 00 of 4 0.30None
Virgin spermatheca2 ± 10 of 4 0.58None
Mated spermatheca4 ± 20 of 4 1.24None
Adult carcass3 ± 10 of 4 0.90None
Larval CNS9 ± 01 of 4 2.74Up
Larval Salivary gland1 ± 00 of 4 0.51None
Larval midgut2 ± 00 of 4 0.75None
Larval tubule2 ± 10 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.32None
Larval fat body3 ± 10 of 4 0.90None
Larval trachea2 ± 20 of 4 0.83None
Larval carcass1 ± 00 of 4 0.42None
S2 cells (growing)1 ± 00 of 4 0.36None
Whole fly3 ± 10 of 4

Looking for CG14535-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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