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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14536-RA through 18771 annotations produced 1 hits



CG14536 (Herp):

Annotation Number : CG14536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031950
Gbrowse : chr2L:7796307-7799846 (-) // 100.0 //
Probeset : 1635051_a_at
Accessions : protein= NP_609151; /// NP_723316;, nucleotide= NM_135307; /// NM_164772;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005875 // microtubule associated complex // inferred
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031950.
BDGP gene expression has embryonic in situ data for CG14536: 4 pix of staining in 1 body parts.
BioGrid reports that CG14536 interacts with CG14899 CG4832 .
VDRC has 3 RNAi stocks for FBgn0031950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 44 of 4 0.90None
Head412 184 of 4 1.00None
Eye459 174 of 4 1.12None
Thoracicoabdominal ganglion537 214 of 4 1.30Up
Salivary gland747 254 of 4 1.83Up
Crop381 84 of 4 0.90None
Midgut1154 544 of 4 2.80Up
Tubule1477 294 of 4 3.60Up
Hindgut423 94 of 4 1.00None
Heart556 284 of 4 1.36Up
Fat body593 424 of 4 1.45Up
Ovary495 44 of 4 1.20Up
Testis579 94 of 4 1.40Up
Male accessory glands1775 1014 of 4 4.30Up
Virgin spermatheca1043 504 of 4 2.56Up
Mated spermatheca1098 364 of 4 2.69Up
Adult carcass476 274 of 4 1.20None
Larval CNS265 84 of 4 0.65Down
Larval Salivary gland941 254 of 4 2.31Up
Larval midgut1291 524 of 4 3.16Up
Larval tubule720 144 of 4 1.80Up
Larval hindgut431 104 of 4 1.06None
Larval fat body515 524 of 4 1.30None
Larval trachea271 144 of 4 0.66Down
Larval carcass294 94 of 4 0.72Down
S2 cells (growing)265 34 of 4 0.65Down
Whole fly408 164 of 4

Looking for CG14536-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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