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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14540-RA through 18771 annotations produced 1 hits


(CG14540):

Annotation Number : CG14540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039398
Gbrowse : chr3R:21785197-21787163 (+) // 100.0 //
Probeset : 1631210_at
Accessions : protein= NP_651451;, nucleotide= NM_143194;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039398.
BioGrid reports that CG14540 interacts with CG4394 CG1487 CG14995 CG16899 CG17567 CG1836 CG2009 CG2889 CG31961 CG32030 CG3213 CG3962 CG17704 CG6441 CG7111 CG8580 CG8854 CG8942 CG9765 CG9949 CG32581 CG8974 .
VDRC has 4 RNAi stocks for FBgn0039398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.01Down
Crop5 ± 10 of 4 0.10Down
Midgut2 ± 10 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body0 ± 00 of 4 0.01Down
Ovary1 ± 10 of 4 0.00Down
Testis1223 ± 474 of 412.60Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.03Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body153 ± 864 of 4 1.60None
Larval trachea2 ± 40 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly96 ± 64 of 4

Looking for CG14540-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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