FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14542-RA through 18771 annotations produced 1 hits

vps2 (vps2):

Annotation Number : CG14542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039402
Gbrowse : chr3R:21878546-21879850 (+) // 100.0 //
Probeset : 1623625_at
Accessions : protein= NP_651455;, nucleotide= NM_143198;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039402.
BioGrid reports that CG14542 interacts with CG9779 CG6667 .
TRiP has 1 RNAi stocks for FBgn0039402 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039402 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	324 ± 8	4 of 4	1.00	None
Head	358 ± 11	4 of 4	1.10	None
Eye	413 ± 22	4 of 4	1.22	None
Thoracicoabdominal ganglion	480 ± 20	4 of 4	1.40	Up
Salivary gland	578 ± 14	4 of 4	1.71	Up
Crop	578 ± 26	4 of 4	1.70	Up
Midgut	546 ± 20	4 of 4	1.60	Up
Tubule	754 ± 28	4 of 4	2.20	Up
Hindgut	559 ± 11	4 of 4	1.60	Up
Heart	356 ± 24	4 of 4	1.05	None
Fat body	361 ± 20	4 of 4	1.07	None
Ovary	371 ± 8	4 of 4	1.10	None
Testis	172 ± 5	4 of 4	0.50	Down
Male accessory glands	438 ± 8	4 of 4	1.30	Up
Virgin spermatheca	529 ± 19	4 of 4	1.56	Up
Mated spermatheca	552 ± 22	4 of 4	1.63	Up
Adult carcass	327 ± 20	4 of 4	1.00	None
Larval CNS	495 ± 17	4 of 4	1.46	Up
Larval Salivary gland	873 ± 21	4 of 4	2.58	Up
Larval midgut	594 ± 44	4 of 4	1.75	Up
Larval tubule	1319 ± 8	4 of 4	3.90	Up
Larval hindgut	801 ± 36	4 of 4	2.37	Up
Larval fat body	531 ± 47	4 of 4	1.60	Up
Larval trachea	765 ± 82	4 of 4	2.26	Up
Larval carcass	719 ± 42	4 of 4	2.12	Up
S2 cells (growing)	756 ± 2	4 of 4	2.23	Up
Whole fly	338 ± 20	4 of 4

Looking for CG14542-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720