FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14549-RA through 18771 annotations produced 1 hits

Dak1 /// Sld5 (Dak1 /// Sld5):

Annotation Number : CG14549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028833 /// FBgn0039403
Gbrowse : chr3R:21881408-21882213 (-) // 100.0 //
Probeset : 1636048_at
Accessions : protein= NP_001138113; /// NP_001138114; /// NP_651456; /// NP_651457;, nucleotide= NM_001144641; /// NM_001144642; /// NM_143199; /// NM_143200;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006260 // DNA replication //
FlyMine data for FBgn0028833 /// FBgn0039403.
BioGrid reports that CG14549 interacts with CG18013 CG9187 CG17295 CG17603 CG1775 CG18316 CG1883 CG3510 CG3949 CG4000 CG18001 CG4550 CG4843 CG6550 CG7203 CG7349 CG7386 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	13 ± 0	2 of 4	0.20	Down
Head	22 ± 3	0 of 4	0.30	Down
Eye	20 ± 1	0 of 4	0.25	Down
Thoracicoabdominal ganglion	14 ± 1	2 of 4	0.20	Down
Salivary gland	16 ± 4	0 of 4	0.20	Down
Crop	21 ± 1	2 of 4	0.30	Down
Midgut	33 ± 1	0 of 4	0.40	Down
Tubule	23 ± 4	3 of 4	0.30	Down
Hindgut	17 ± 1	4 of 4	0.20	Down
Heart	18 ± 3	1 of 4	0.22	Down
Fat body	28 ± 12	4 of 4	0.35	Down
Ovary	155 ± 6	4 of 4	1.90	Up
Testis	106 ± 4	4 of 4	1.30	Up
Male accessory glands	45 ± 5	4 of 4	0.50	Down
Virgin spermatheca	29 ± 3	4 of 4	0.35	Down
Mated spermatheca	37 ± 3	4 of 4	0.45	Down
Adult carcass	18 ± 4	1 of 4	0.20	Down
Larval CNS	87 ± 4	4 of 4	1.04	None
Larval Salivary gland	108 ± 7	4 of 4	1.30	Up
Larval midgut	32 ± 2	3 of 4	0.39	Down
Larval tubule	37 ± 1	4 of 4	0.40	Down
Larval hindgut	40 ± 3	3 of 4	0.48	Down
Larval fat body	34 ± 10	1 of 4	0.40	Down
Larval trachea	60 ± 9	4 of 4	0.73	Down
Larval carcass	52 ± 3	4 of 4	0.63	Down
S2 cells (growing)	55 ± 1	4 of 4	0.67	Down
Whole fly	83 ± 3	4 of 4

Looking for CG14549-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720