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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14560-RA through 18771 annotations produced 1 hits



Drosophila male specific opa containing gene (msopa):

Annotation Number : CG14560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004414
Gbrowse : chr3L:22075907-22076403 (+) // 100.0 //
Probeset : 1632168_at
Accessions : protein= NP_524859;, nucleotide= NM_080120;
FlyMine data for FBgn0004414.
VDRC has 1 RNAi stocks for FBgn0004414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion7 ± 23 of 4 0.00Down
Salivary gland5 ± 30 of 4 0.02Down
Crop5 ± 11 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.00Down
Heart4 ± 11 of 4 0.02Down
Fat body7 ± 42 of 4 0.03Down
Ovary3 ± 21 of 4 0.00Down
Testis20 ± 53 of 4 0.10Down
Male accessory glands7210 ± 8904 of 428.10Up
Virgin spermatheca4 ± 10 of 4 0.02Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass42 ± 104 of 4 0.20Down
Larval CNS2 ± 11 of 4 0.01Down
Larval Salivary gland6 ± 20 of 4 0.02Down
Larval midgut16 ± 33 of 4 0.06Down
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut7 ± 13 of 4 0.03Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea6 ± 32 of 4 0.02Down
Larval carcass5 ± 11 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly257 ± 614 of 4

Looking for CG14560-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime