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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14561-RA through 18771 annotations produced 1 hits



/// /// (CG14561 /// DmojCG14561 /// DvirCG14561):

Annotation Number : CG14561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037149
Gbrowse : chr3L:22059232-22059817 (+) // 100.0 //
Probeset : 1627908_at
Accessions : protein= NP_649377;, nucleotide= NM_141120;
FlyMine data for FBgn0037149.
BDGP gene expression has embryonic in situ data for CG14561: 19 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0037149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.20Down
Head9 ± 13 of 4 0.10Down
Eye17 ± 13 of 4 0.24Down
Thoracicoabdominal ganglion16 ± 24 of 4 0.20Down
Salivary gland5 ± 20 of 4 0.08Down
Crop14 ± 21 of 4 0.20Down
Midgut12 ± 42 of 4 0.20Down
Tubule7 ± 10 of 4 0.10Down
Hindgut12 ± 03 of 4 0.20Down
Heart8 ± 10 of 4 0.11Down
Fat body9 ± 71 of 4 0.13Down
Ovary182 ± 64 of 4 2.50Up
Testis90 ± 54 of 4 1.20None
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.07Down
Mated spermatheca6 ± 10 of 4 0.09Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS82 ± 74 of 4 1.14None
Larval Salivary gland14 ± 11 of 4 0.20Down
Larval midgut17 ± 20 of 4 0.24Down
Larval tubule12 ± 12 of 4 0.20Down
Larval hindgut16 ± 14 of 4 0.23Down
Larval fat body21 ± 33 of 4 0.30Down
Larval trachea36 ± 24 of 4 0.50Down
Larval carcass16 ± 41 of 4 0.23Down
S2 cells (growing)58 ± 74 of 4 0.80None
Whole fly72 ± 64 of 4

Looking for CG14561-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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