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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14564-RA through 18771 annotations produced 1 hits



(CG14564):

Annotation Number : CG14564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037131
Gbrowse : chr3L:21750256-21751081 (+) // 100.0 //
Probeset : 1632192_at
Accessions : protein= NP_649361;, nucleotide= NM_141104;
FlyMine data for FBgn0037131.
VDRC has 2 RNAi stocks for FBgn0037131 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.90None
Head1 ± 00 of 4 0.60Down
Eye1 ± 00 of 4 0.41Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.70Down
Salivary gland3 ± 00 of 4 1.31None
Crop2 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 0.60Down
Tubule2 ± 00 of 4 1.10None
Hindgut2 ± 00 of 4 0.70None
Heart1 ± 00 of 4 0.55Down
Fat body2 ± 00 of 4 0.76Down
Ovary3 ± 00 of 4 1.10None
Testis1 ± 00 of 4 0.50Down
Male accessory glands6 ± 10 of 4 2.50None
Virgin spermatheca2 ± 00 of 4 0.80None
Mated spermatheca2 ± 00 of 4 0.79None
Adult carcass4 ± 00 of 4 1.60None
Larval CNS2 ± 00 of 4 0.75None
Larval Salivary gland9 ± 40 of 4 3.60None
Larval midgut1 ± 00 of 4 0.68Down
Larval tubule3 ± 00 of 4 1.20None
Larval hindgut3 ± 00 of 4 1.14None
Larval fat body2 ± 00 of 4 0.90None
Larval trachea13 ± 60 of 4 4.94None
Larval carcass2 ± 00 of 4 1.01None
S2 cells (growing)2 ± 00 of 4 0.85None
Whole fly2 ± 00 of 4

Looking for CG14564-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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