Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1458-RA through 18771 annotations produced 1 hits



(CG1458):

Annotation Number : CG1458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062442
Gbrowse : chr3R:25047937-25049149 (-) // 100.0 //
Probeset : 1640849_at
Accessions : protein= NP_651684;, nucleotide= NM_143427;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : "0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // infer
FlyMine data for FBgn0062442.
Homophila reports that CG1458 is a close match (5e-24) to human gene CISD2;ERIS;WFS2;ZCD2 (NP_001008389), a gene associated with Wolfram syndrome 2, 604928 (3).
TRiP has 1 RNAi stocks for FBgn0062442 available for purchase.
VDRC has 4 RNAi stocks for FBgn0062442 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain903 ± 174 of 4 1.20Up
Head1022 ± 614 of 4 1.40Up
Eye867 ± 314 of 4 1.18Up
Thoracicoabdominal ganglion1121 ± 204 of 4 1.50Up
Salivary gland828 ± 614 of 4 1.13None
Crop887 ± 294 of 4 1.20Up
Midgut688 ± 204 of 4 0.90None
Tubule811 ± 234 of 4 1.10Up
Hindgut1061 ± 194 of 4 1.40Up
Heart1728 ± 914 of 4 2.36Up
Fat body1486 ± 1594 of 4 2.03Up
Ovary601 ± 74 of 4 0.80Down
Testis340 ± 74 of 4 0.50Down
Male accessory glands797 ± 214 of 4 1.10None
Virgin spermatheca778 ± 154 of 4 1.06None
Mated spermatheca662 ± 124 of 4 0.90None
Adult carcass1301 ± 184 of 4 1.80Up
Larval CNS606 ± 224 of 4 0.83Down
Larval Salivary gland578 ± 214 of 4 0.79Down
Larval midgut588 ± 204 of 4 0.80Down
Larval tubule660 ± 354 of 4 0.90None
Larval hindgut665 ± 174 of 4 0.91None
Larval fat body395 ± 234 of 4 0.50Down
Larval trachea584 ± 354 of 4 0.80Down
Larval carcass885 ± 694 of 4 1.21None
S2 cells (growing)767 ± 104 of 4 1.05None
Whole fly733 ± 374 of 4

Looking for CG1458-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime