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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14591-RA through 18771 annotations produced 1 hits



(CG14591):

Annotation Number : CG14591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033054
Gbrowse : chr2R:1924062-1927840 (-) // 100.0 //
Probeset : 1640767_s_at
Accessions : protein= NP_610196; /// NP_724447;, nucleotide= NM_136352; /// NM_165456;
FlyMine data for FBgn0033054.
BDGP gene expression has embryonic in situ data for CG14591: 10 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0033054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain620 264 of 4 8.20Up
Head711 224 of 4 9.40Up
Eye1989 894 of 426.16Up
Thoracicoabdominal ganglion782 84 of 410.30Up
Salivary gland30 23 of 4 0.40Down
Crop20 14 of 4 0.30Down
Midgut10 10 of 4 0.10Down
Tubule6 00 of 4 0.10Down
Hindgut5 11 of 4 0.10Down
Heart4 10 of 4 0.06Down
Fat body13 40 of 4 0.17Down
Ovary1 00 of 4 0.00Down
Testis70 24 of 4 0.90None
Male accessory glands2 10 of 4 0.00Down
Virgin spermatheca12 12 of 4 0.16Down
Mated spermatheca13 33 of 4 0.18Down
Adult carcass101 94 of 4 1.30None
Larval CNS265 154 of 4 3.49Up
Larval Salivary gland6 00 of 4 0.09Down
Larval midgut10 10 of 4 0.14Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut2 10 of 4 0.04Down
Larval fat body18 42 of 4 0.20Down
Larval trachea24 431 of 4 0.32None
Larval carcass5 00 of 4 0.07Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly76 44 of 4

Looking for CG14591-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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