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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14593-RA through 18771 annotations produced 1 hits



(CG14593):

Annotation Number : CG14593
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033058
Gbrowse : chr2R:1950205-1955219 (+) // 100.0 //
Probeset : 1636300_at
Accessions : protein= NP_001163060; /// NP_610199;, nucleotide= NM_001169589; /// NM_136355;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004930 // G-protein coupled receptor activity /
FlyMine data for FBgn0033058.
Homophila reports that CG14593 is a close match (4e-11) to human gene CCR2;CMKBR2 (NP_000639), a gene associated with {HIV infection, susceptibility/resistance to} (3).
TRiP has 1 RNAi stocks for FBgn0033058 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033058 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 11 of 4 3.20Up
Head3 ± 10 of 4 0.80None
Eye5 ± 10 of 4 1.36None
Thoracicoabdominal ganglion8 ± 20 of 4 2.10None
Salivary gland9 ± 40 of 4 2.45None
Crop2 ± 10 of 4 0.50None
Midgut9 ± 20 of 4 2.30None
Tubule5 ± 00 of 4 1.40Up
Hindgut3 ± 10 of 4 0.80None
Heart2 ± 00 of 4 0.51None
Fat body3 ± 20 of 4 0.80None
Ovary3 ± 10 of 4 1.00None
Testis16 ± 14 of 4 4.10Up
Male accessory glands3 ± 20 of 4 1.00None
Virgin spermatheca1 ± 00 of 4 0.41None
Mated spermatheca1 ± 00 of 4 0.36Down
Adult carcass3 ± 10 of 4 0.80None
Larval CNS10 ± 12 of 4 2.58Up
Larval Salivary gland9 ± 30 of 4 2.36None
Larval midgut3 ± 20 of 4 0.92None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut3 ± 00 of 4 0.90None
Larval fat body7 ± 20 of 4 1.90None
Larval trachea2 ± 20 of 4 0.55None
Larval carcass3 ± 10 of 4 0.79None
S2 cells (growing)2 ± 00 of 4 0.53None
Whole fly4 ± 00 of 4

Looking for CG14593-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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