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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14606-RA through 18771 annotations produced 1 hits



(CG14606):

Annotation Number : CG14606
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037485
Gbrowse : chr3R:3040457-3042594 (-) // 100.0 //
Probeset : 1640556_at
Accessions : protein= NP_649706;, nucleotide= NM_141449;
Pathway : engulfment // inferred from mutant phenotype /// 0055085 // transmembrane transport // inferred from electronic annotat
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0037485.
Homophila reports that CG14606 is a close match (8e-12) to human gene DYT18;GLUT1;PED;SLC2A1 (NP_006507), a gene associated with Dystonia-18, 612126 (3);Glucose transport defect, blood-brain barrier, 606777 (3);Paroxysmal exertion-induced dyskinesia and hemolytic anemia, 612126 (3).
BioGrid reports that CG14606 interacts with CG6233 .
VDRC has 3 RNAi stocks for FBgn0037485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye3 00 of 4 0.10Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland8 31 of 4 0.24Down
Crop5 11 of 4 0.10Down
Midgut36 62 of 4 1.10None
Tubule1468 2004 of 442.30Up
Hindgut84 64 of 4 2.40Up
Heart3 00 of 4 0.10Down
Fat body7 81 of 4 0.21Down
Ovary2 00 of 4 0.10Down
Testis4 00 of 4 0.10Down
Male accessory glands6 20 of 4 0.20Down
Virgin spermatheca3 00 of 4 0.11Down
Mated spermatheca2 10 of 4 0.07Down
Adult carcass3 20 of 4 0.10Down
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland8 01 of 4 0.23Down
Larval midgut6 10 of 4 0.19Down
Larval tubule1258 1234 of 436.20Up
Larval hindgut6 12 of 4 0.18Down
Larval fat body7 11 of 4 0.20Down
Larval trachea3 00 of 4 0.11Down
Larval carcass3 10 of 4 0.10Down
S2 cells (growing)2 00 of 4 0.07Down
Whole fly34 24 of 4

Looking for CG14606-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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