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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14612-RA through 18771 annotations produced 1 hits



CG14612 (e(y)2b):

Annotation Number : CG14612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040670
Gbrowse : chr3R:2919845-2920264 (+) // 100.0 //
Probeset : 1626717_at
Accessions : protein= NP_652310;, nucleotide= NM_144053;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040670.
BioGrid reports that CG14612 interacts with CG17358 CG32016 CG4066 CG4157 CG7808 CG15514 CG31211 CG32392 CG4909 CG5119 CG5681 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 12 of 4 0.30Down
Head8 ± 20 of 4 0.20Down
Eye17 ± 52 of 4 0.44Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland2 ± 00 of 4 0.05Down
Crop7 ± 10 of 4 0.20Down
Midgut3 ± 00 of 4 0.10Down
Tubule2 ± 10 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart5 ± 10 of 4 0.14Down
Fat body4 ± 20 of 4 0.10Down
Ovary2 ± 00 of 4 0.10Down
Testis437 ± 154 of 411.10Up
Male accessory glands11 ± 50 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca4 ± 20 of 4 0.12Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS8 ± 10 of 4 0.21Down
Larval Salivary gland4 ± 20 of 4 0.11Down
Larval midgut9 ± 20 of 4 0.23Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.09Down
Larval fat body56 ± 212 of 4 1.40None
Larval trachea9 ± 80 of 4 0.24Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)9 ± 20 of 4 0.23Down
Whole fly39 ± 14 of 4

Looking for CG14612-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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