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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14616-RC through 18771 annotations produced 1 hits



lethal (1) G0196 (l(1)G0196):

Annotation Number : CG14616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027279
Gbrowse : chrX:21889018-21909287 (+) // 100.0 //
Probeset : 1624265_at
Accessions : protein= NP_001097041; /// NP_788950; /// NP_788951; /// NP_788952; /// NP_788953;, nucleotide= NM_001103571; /// NM_176777; /// NM_176778; /// NM_176779; /// NM_176780;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0000827 // inositol 1
FlyMine data for FBgn0027279.
BioGrid reports that CG14616 interacts with CG7238 .
VDRC has 1 RNAi stocks for FBgn0027279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain392 ± 204 of 420.60Up
Head65 ± 44 of 4 3.40Up
Eye73 ± 54 of 4 3.87Up
Thoracicoabdominal ganglion296 ± 104 of 415.60Up
Salivary gland37 ± 54 of 4 1.96None
Crop31 ± 14 of 4 1.70Up
Midgut22 ± 44 of 4 1.20None
Tubule49 ± 04 of 4 2.60Up
Hindgut37 ± 44 of 4 2.00Up
Heart34 ± 34 of 4 1.83Up
Fat body29 ± 64 of 4 1.53None
Ovary9 ± 11 of 4 0.50Down
Testis6 ± 12 of 4 0.30Down
Male accessory glands29 ± 11 of 4 1.50Up
Virgin spermatheca21 ± 04 of 4 1.15Up
Mated spermatheca21 ± 14 of 4 1.12None
Adult carcass40 ± 54 of 4 2.10Up
Larval CNS61 ± 94 of 4 3.25Up
Larval Salivary gland37 ± 54 of 4 1.96Up
Larval midgut21 ± 14 of 4 1.15None
Larval tubule33 ± 34 of 4 1.70Up
Larval hindgut17 ± 24 of 4 0.93None
Larval fat body28 ± 13 of 4 1.50Up
Larval trachea32 ± 84 of 4 1.73None
Larval carcass21 ± 14 of 4 1.13None
S2 cells (growing)61 ± 24 of 4 3.22Up
Whole fly19 ± 04 of 4

Looking for CG14616-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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