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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14618-RA through 18771 annotations produced 1 hits



(CG14618):

Annotation Number : CG14618
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031189
Gbrowse : chrX:21875565-21876837 (+) // 100.0 //
Probeset : 1636336_at
Accessions : protein= NP_608464;, nucleotide= NM_134620;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0031189.
BDGP gene expression has embryonic in situ data for CG14618: 8 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0031189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 34 of 4 0.80Down
Head37 14 of 4 0.60Down
Eye37 54 of 4 0.59Down
Thoracicoabdominal ganglion45 34 of 4 0.70Down
Salivary gland88 23 of 4 1.38Up
Crop67 44 of 4 1.00None
Midgut51 64 of 4 0.80None
Tubule58 34 of 4 0.90None
Hindgut49 14 of 4 0.80Down
Heart55 34 of 4 0.86None
Fat body46 14 of 4 0.72Down
Ovary179 64 of 4 2.80Up
Testis20 24 of 4 0.30Down
Male accessory glands70 44 of 4 1.10None
Virgin spermatheca48 34 of 4 0.76Down
Mated spermatheca59 44 of 4 0.92None
Adult carcass46 33 of 4 0.70Down
Larval CNS74 84 of 4 1.17None
Larval Salivary gland66 24 of 4 1.03None
Larval midgut32 20 of 4 0.51Down
Larval tubule47 14 of 4 0.70Down
Larval hindgut46 44 of 4 0.73Down
Larval fat body29 41 of 4 0.50Down
Larval trachea69 94 of 4 1.08None
Larval carcass53 44 of 4 0.84None
S2 cells (growing)92 34 of 4 1.44Up
Whole fly64 34 of 4

Looking for CG14618-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime