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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14619-RE through 18771 annotations produced 1 hits



(CG14619):

Annotation Number : CG14619
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031187
Gbrowse : chrX:21857638-21870327 (+) // 100.0 //
Probeset : 1627278_s_at
Accessions : protein= NP_608462; /// NP_728453; /// NP_728454; /// NP_728455; /// NP_728456;, nucleotide= NM_134618; /// NM_167775; /// NM_167776; /// NM_167777; /// NM_167778;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0004843 // ubiquitin-specific pro
FlyMine data for FBgn0031187.
BioGrid reports that CG14619 interacts with CG5422 .
VDRC has 3 RNAi stocks for FBgn0031187 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain378 ± 74 of 4 2.40Up
Head237 ± 224 of 4 1.50Up
Eye269 ± 174 of 4 1.69Up
Thoracicoabdominal ganglion418 ± 304 of 4 2.60Up
Salivary gland163 ± 114 of 4 1.02None
Crop267 ± 154 of 4 1.70Up
Midgut68 ± 24 of 4 0.40Down
Tubule34 ± 13 of 4 0.20Down
Hindgut191 ± 64 of 4 1.20Up
Heart147 ± 44 of 4 0.92None
Fat body89 ± 254 of 4 0.56Down
Ovary142 ± 44 of 4 0.90None
Testis515 ± 54 of 4 3.20Up
Male accessory glands86 ± 34 of 4 0.50Down
Virgin spermatheca23 ± 14 of 4 0.15Down
Mated spermatheca29 ± 24 of 4 0.18Down
Adult carcass253 ± 74 of 4 1.60Up
Larval CNS244 ± 324 of 4 1.53Up
Larval Salivary gland96 ± 74 of 4 0.60Down
Larval midgut74 ± 44 of 4 0.46Down
Larval tubule171 ± 44 of 4 1.10None
Larval hindgut161 ± 54 of 4 1.01None
Larval fat body162 ± 194 of 4 1.00None
Larval trachea142 ± 94 of 4 0.89None
Larval carcass307 ± 244 of 4 1.93Up
S2 cells (growing)320 ± 44 of 4 2.01Up
Whole fly159 ± 84 of 4

Looking for CG14619-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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