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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14622-RB through 18771 annotations produced 1 hits



Dishevelled Associated Activator of Morphogenesis (DAAM):

Annotation Number : CG14622
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025641
Gbrowse : chrX:1183739-1216389 (-) // 100.0 //
Probeset : 1629015_a_at
Accessions : protein= NP_569900; /// NP_726723; /// NP_726724;, nucleotide= NM_130544; /// NM_166875; /// NM_166876;
Pathway : open tracheal system // inferred from mutant phenotype /// 0050770 // regulation of axonogenesis // inferred from direc
Interpro : 0044295 // axonal growth cone // inferred from direct assay
FlyMine data for FBgn0025641.
BDGP gene expression has embryonic in situ data for EG:114D9.2: 33 pix of staining in 24 body parts.
Homophila reports that CG14622 is a close match (6e-34) to human gene DIA;DIAPH2;POF2 (NP_006720), a gene associated with Premature ovarian failure, 300511 (3).
TRiP has 1 RNAi stocks for FBgn0025641 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025641 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain796 ± 184 of 4 4.70Up
Head404 ± 274 of 4 2.40Up
Eye1000 ± 344 of 4 5.92Up
Thoracicoabdominal ganglion421 ± 114 of 4 2.50Up
Salivary gland6 ± 40 of 4 0.04Down
Crop14 ± 24 of 4 0.10Down
Midgut9 ± 00 of 4 0.10Down
Tubule957 ± 524 of 4 5.70Up
Hindgut24 ± 34 of 4 0.10Down
Heart38 ± 14 of 4 0.23Down
Fat body33 ± 94 of 4 0.20Down
Ovary371 ± 64 of 4 2.20Up
Testis48 ± 24 of 4 0.30Down
Male accessory glands10 ± 32 of 4 0.10Down
Virgin spermatheca8 ± 12 of 4 0.05Down
Mated spermatheca7 ± 12 of 4 0.04Down
Adult carcass42 ± 74 of 4 0.30Down
Larval CNS477 ± 454 of 4 2.83Up
Larval Salivary gland10 ± 11 of 4 0.06Down
Larval midgut35 ± 24 of 4 0.21Down
Larval tubule1266 ± 224 of 4 7.50Up
Larval hindgut67 ± 14 of 4 0.40Down
Larval fat body20 ± 34 of 4 0.10Down
Larval trachea43 ± 294 of 4 0.26Down
Larval carcass49 ± 54 of 4 0.29Down
S2 cells (growing)5 ± 02 of 4 0.03Down
Whole fly169 ± 84 of 4

Looking for CG14622-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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