FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14625-RB through 18771 annotations produced 1 hits

(CG14625):

Annotation Number : CG14625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040358
Gbrowse : chrX:1093650-1096954 (+) // 100.0 //
Probeset : 1626814_at
Accessions : protein= NP_569892;, nucleotide= NM_130536;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040358.
BioGrid reports that CG14625 interacts with CG16721 CG17446 CG18259 CG3323 CG3929 CG5939 CG15524 CG18217 CG18584 CG4755 CG6424 CG6569 CG8676 CG8851 CG9285 .
VDRC has 5 RNAi stocks for FBgn0040358 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.20	None
Head	5 ± 2	0 of 4	1.60	None
Eye	1 ± 0	0 of 4	0.54	None
Thoracicoabdominal ganglion	1 ± 1	0 of 4	0.50	None
Salivary gland	12 ± 5	0 of 4	3.79	None
Crop	2 ± 0	0 of 4	0.70	None
Midgut	0 ± 0	0 of 4	0.30	None
Tubule	1 ± 0	0 of 4	0.40	Down
Hindgut	13 ± 1	2 of 4	4.20	Up
Heart	1 ± 0	0 of 4	0.36	None
Fat body	0 ± 0	0 of 4	0.23	None
Ovary	0 ± 0	0 of 4	0.20	None
Testis	0 ± 0	0 of 4	0.10	None
Male accessory glands	1 ± 0	0 of 4	0.30	None
Virgin spermatheca	2 ± 1	0 of 4	0.64	None
Mated spermatheca	1 ± 0	0 of 4	0.52	None
Adult carcass	3 ± 2	0 of 4	1.00	None
Larval CNS	0 ± 0	0 of 4	0.15	None
Larval Salivary gland	0 ± 0	0 of 4	0.16	None
Larval midgut	3 ± 1	0 of 4	1.06	None
Larval tubule	1 ± 0	0 of 4	0.30	None
Larval hindgut	0 ± 0	0 of 4	0.11	None
Larval fat body	1 ± 0	0 of 4	0.40	None
Larval trachea	0 ± 0	0 of 4	0.13	None
Larval carcass	0 ± 0	0 of 4	0.20	None
S2 cells (growing)	0 ± 0	0 of 4	0.15	None
Whole fly	3 ± 1	0 of 4

Looking for CG14625-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720