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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14625-RB through 18771 annotations produced 1 hits


Annotation Number : CG14625
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040358
Gbrowse : chrX:1093650-1096954 (+) // 100.0 //
Probeset : 1626814_at
Accessions : protein= NP_569892;, nucleotide= NM_130536;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040358.
BioGrid reports that CG14625 interacts with CG16721 CG17446 CG18259 CG3323 CG3929 CG5939 CG15524 CG18217 CG18584 CG4755 CG6424 CG6569 CG8676 CG8851 CG9285 .
VDRC has 5 RNAi stocks for FBgn0040358 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20None
Head5 20 of 4 1.60None
Eye1 00 of 4 0.54None
Thoracicoabdominal ganglion1 10 of 4 0.50None
Salivary gland12 50 of 4 3.79None
Crop2 00 of 4 0.70None
Midgut0 00 of 4 0.30None
Tubule1 00 of 4 0.40Down
Hindgut13 12 of 4 4.20Up
Heart1 00 of 4 0.36None
Fat body0 00 of 4 0.23None
Ovary0 00 of 4 0.20None
Testis0 00 of 4 0.10None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca2 10 of 4 0.64None
Mated spermatheca1 00 of 4 0.52None
Adult carcass3 20 of 4 1.00None
Larval CNS0 00 of 4 0.15None
Larval Salivary gland0 00 of 4 0.16None
Larval midgut3 10 of 4 1.06None
Larval tubule1 00 of 4 0.30None
Larval hindgut0 00 of 4 0.11None
Larval fat body1 00 of 4 0.40None
Larval trachea0 00 of 4 0.13None
Larval carcass0 00 of 4 0.20None
S2 cells (growing)0 00 of 4 0.15None
Whole fly3 10 of 4

Looking for CG14625-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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