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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1463-RA through 18771 annotations produced 1 hits



(CG1463):

Annotation Number : CG1463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030406
Gbrowse : chrX:12503589-12505632 (-) // 100.0 //
Probeset : 1640149_at
Accessions : protein= NP_572813;, nucleotide= NM_132585;
FlyMine data for FBgn0030406.
BDGP gene expression has embryonic in situ data for CG1463: 20 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0030406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain137 ± 64 of 4 4.40Up
Head59 ± 34 of 4 1.90Up
Eye69 ± 64 of 4 2.24Up
Thoracicoabdominal ganglion128 ± 74 of 4 4.10Up
Salivary gland147 ± 104 of 4 4.75Up
Crop78 ± 64 of 4 2.50Up
Midgut81 ± 44 of 4 2.60Up
Tubule48 ± 24 of 4 1.60Up
Hindgut63 ± 44 of 4 2.00Up
Heart44 ± 54 of 4 1.45None
Fat body74 ± 164 of 4 2.42Up
Ovary46 ± 34 of 4 1.50Up
Testis8 ± 04 of 4 0.30Down
Male accessory glands121 ± 84 of 4 3.90Up
Virgin spermatheca53 ± 54 of 4 1.74Up
Mated spermatheca52 ± 34 of 4 1.70Up
Adult carcass40 ± 44 of 4 1.30None
Larval CNS160 ± 134 of 4 5.19Up
Larval Salivary gland211 ± 84 of 4 6.80Up
Larval midgut72 ± 14 of 4 2.33Up
Larval tubule79 ± 54 of 4 2.60Up
Larval hindgut85 ± 64 of 4 2.77Up
Larval fat body71 ± 74 of 4 2.30Up
Larval trachea53 ± 24 of 4 1.72Up
Larval carcass90 ± 124 of 4 2.92Up
S2 cells (growing)39 ± 24 of 4 1.27None
Whole fly31 ± 34 of 4

Looking for CG1463-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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