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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14637-RA through 18771 annotations produced 1 hits



abstract (abs):

Annotation Number : CG14637
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015331
Gbrowse : chr3R:58764-60764 (+) // 100.0 //
Probeset : 1623353_at
Accessions : protein= NP_524220;, nucleotide= NM_079496;
Pathway : via spliceosome // inferred by curator /// 0006915 // apoptosis // non-traceable author statement /// 0007399 // nervou
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0015331.
BDGP gene expression has embryonic in situ data for abs: 4 pix of staining in 1 body parts.
BioGrid reports that CG14637 interacts with CG6066 CG1782 CG17894 CG3510 CG8426 CG4319 .
VDRC has 1 RNAi stocks for FBgn0015331 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 14 of 4 0.80Down
Head48 ± 24 of 4 0.70Down
Eye41 ± 14 of 4 0.57Down
Thoracicoabdominal ganglion47 ± 34 of 4 0.70Down
Salivary gland48 ± 44 of 4 0.66Down
Crop65 ± 44 of 4 0.90None
Midgut52 ± 54 of 4 0.70Down
Tubule52 ± 24 of 4 0.70Down
Hindgut46 ± 14 of 4 0.60Down
Heart39 ± 14 of 4 0.54Down
Fat body50 ± 24 of 4 0.70Down
Ovary126 ± 34 of 4 1.70Up
Testis210 ± 44 of 4 2.90Up
Male accessory glands53 ± 44 of 4 0.70Down
Virgin spermatheca60 ± 44 of 4 0.83None
Mated spermatheca55 ± 04 of 4 0.77Down
Adult carcass49 ± 34 of 4 0.70Down
Larval CNS100 ± 54 of 4 1.38Up
Larval Salivary gland98 ± 44 of 4 1.36Up
Larval midgut66 ± 44 of 4 0.92None
Larval tubule133 ± 74 of 4 1.80Up
Larval hindgut75 ± 24 of 4 1.04None
Larval fat body146 ± 104 of 4 2.00Up
Larval trachea67 ± 44 of 4 0.94None
Larval carcass64 ± 24 of 4 0.90None
S2 cells (growing)165 ± 54 of 4 2.28Up
Whole fly72 ± 34 of 4

Looking for CG14637-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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