FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14642-RA through 18771 annotations produced 2 hits

(CG14642):

Annotation Number : CG14642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037222
Gbrowse : chr3R:66766-68508 (-) // 100.0 //
Probeset : 1634805_at
Accessions : protein= NP_649441; /// NP_730791;, nucleotide= NM_141184; /// NM_164322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037222.
BDGP gene expression has embryonic in situ data for CG14642: 4 pix of staining in 1 body parts.
Homophila reports that CG14642 is a close match (1e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG14642 interacts with CG17107 .
VDRC has 2 RNAi stocks for FBgn0037222 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	3 of 4	0.30	Down
Head	15 ± 3	4 of 4	0.80	None
Eye	7 ± 1	1 of 4	0.37	Down
Thoracicoabdominal ganglion	8 ± 1	3 of 4	0.40	Down
Salivary gland	14 ± 2	1 of 4	0.76	None
Crop	8 ± 1	2 of 4	0.40	Down
Midgut	13 ± 0	4 of 4	0.70	None
Tubule	44 ± 4	4 of 4	2.30	Up
Hindgut	9 ± 1	4 of 4	0.50	Down
Heart	17 ± 1	4 of 4	0.90	None
Fat body	27 ± 2	4 of 4	1.40	Up
Ovary	2 ± 1	1 of 4	0.10	Down
Testis	116 ± 15	4 of 4	6.10	Up
Male accessory glands	6 ± 1	1 of 4	0.30	Down
Virgin spermatheca	159 ± 5	4 of 4	8.29	Up
Mated spermatheca	155 ± 14	4 of 4	8.10	Up
Adult carcass	14 ± 2	2 of 4	0.70	None
Larval CNS	7 ± 3	4 of 4	0.40	Down
Larval Salivary gland	5 ± 1	0 of 4	0.26	Down
Larval midgut	8 ± 1	1 of 4	0.43	Down
Larval tubule	287 ± 15	4 of 4	15.00	Up
Larval hindgut	15 ± 1	4 of 4	0.82	None
Larval fat body	104 ± 8	4 of 4	5.40	Up
Larval trachea	13 ± 2	4 of 4	0.71	None
Larval carcass	165 ± 10	4 of 4	8.60	Up
S2 cells (growing)	119 ± 7	4 of 4	6.20	Up
Whole fly	19 ± 2	4 of 4

(CG14642):

Annotation Number : CG14642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037222
Gbrowse : chr3R:66766-68508 (-) // 100.0 //
Probeset : 1623689_a_at
Accessions : protein= NP_649441; /// NP_730791;, nucleotide= NM_141184; /// NM_164322;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0037222.
BDGP gene expression has embryonic in situ data for CG14642: 4 pix of staining in 1 body parts.
Homophila reports that CG14642 is a close match (1e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
BioGrid reports that CG14642 interacts with CG17107 .
VDRC has 2 RNAi stocks for FBgn0037222 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	25 ± 2	4 of 4	1.00	None
Eye	9 ± 1	0 of 4	0.35	Down
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.10	Down
Salivary gland	4 ± 0	0 of 4	0.16	Down
Crop	8 ± 3	0 of 4	0.30	Down
Midgut	18 ± 1	2 of 4	0.70	None
Tubule	94 ± 15	4 of 4	3.60	Up
Hindgut	7 ± 1	0 of 4	0.30	Down
Heart	23 ± 5	3 of 4	0.92	None
Fat body	17 ± 8	1 of 4	0.66	None
Ovary	1 ± 1	0 of 4	0.10	Down
Testis	264 ± 14	4 of 4	10.20	Up
Male accessory glands	2 ± 0	0 of 4	0.10	Down
Virgin spermatheca	907 ± 85	4 of 4	34.84	Up
Mated spermatheca	843 ± 106	4 of 4	32.37	Up
Adult carcass	25 ± 4	2 of 4	1.00	None
Larval CNS	8 ± 0	0 of 4	0.33	Down
Larval Salivary gland	1 ± 0	0 of 4	0.06	Down
Larval midgut	9 ± 4	1 of 4	0.38	Down
Larval tubule	748 ± 12	4 of 4	28.70	Up
Larval hindgut	14 ± 2	3 of 4	0.54	Down
Larval fat body	135 ± 14	4 of 4	5.20	Up
Larval trachea	16 ± 3	4 of 4	0.65	None
Larval carcass	157 ± 15	4 of 4	6.06	Up
S2 cells (growing)	179 ± 9	4 of 4	6.87	Up
Whole fly	26 ± 3	4 of 4

Looking for CG14642-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720