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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14645-RA through 18771 annotations produced 1 hits



/// Ribosomal protein L36A (CG14645 /// RpL36A):

Annotation Number : CG14645
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040687
Gbrowse : chr3R:160838-161237 (+) // 100.0 //
Probeset : 1638654_at
Accessions : protein= NP_652325;, nucleotide= NM_144068;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005622 // intracellular // inferred from ele
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0040687.
BioGrid reports that CG14645 interacts with CG30403 CG7641 CG7808 .
VDRC has 3 RNAi stocks for FBgn0040687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 41 of 4 0.00Down
Head2028 6144 of 4 0.50None
Eye7 31 of 4 0.00Down
Thoracicoabdominal ganglion27 63 of 4 0.00Down
Salivary gland20 110 of 4 0.01Down
Crop880 7383 of 4 0.20Down
Midgut6565 1634 of 4 1.70Up
Tubule6 10 of 4 0.00Down
Hindgut25 51 of 4 0.00Down
Heart16 41 of 4 0.00Down
Fat body5 10 of 4 0.00Down
Ovary6 10 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca3 10 of 4 0.00Down
Mated spermatheca2 10 of 4 0.00Down
Adult carcass287 1962 of 4 0.10Down
Larval CNS4 20 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut29 131 of 4 0.01Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut9 20 of 4 0.00Down
Larval fat body3 10 of 4 0.00Down
Larval trachea9 51 of 4 0.00Down
Larval carcass3 10 of 4 0.00Down
S2 cells (growing)7 10 of 4 0.00Down
Whole fly3862 1844 of 4

Looking for CG14645-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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