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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14652-RA through 18771 annotations produced 4 hits



CG14652 (CG34357):

Annotation Number : CG12585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085386
Gbrowse : chr3R:359849-360173 (-) // 100.0 //
Probeset : 1630117_at
Accessions : protein= NP_001097681; /// NP_001097682;, nucleotide= NM_001104211; /// NM_001104212;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0085386.
TRiP has 1 RNAi stocks for FBgn0085386 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 3.70None
Head2 ± 00 of 4 1.40None
Eye0 ± 00 of 4 0.36None
Thoracicoabdominal ganglion6 ± 10 of 4 3.40None
Salivary gland3 ± 00 of 4 1.49None
Crop1 ± 00 of 4 0.90None
Midgut3 ± 10 of 4 1.90None
Tubule1 ± 00 of 4 0.70Down
Hindgut3 ± 00 of 4 1.60None
Heart1 ± 00 of 4 0.51None
Fat body2 ± 00 of 4 1.03None
Ovary1 ± 00 of 4 0.80None
Testis2 ± 10 of 4 1.50None
Male accessory glands1 ± 00 of 4 0.70None
Virgin spermatheca2 ± 00 of 4 1.18None
Mated spermatheca1 ± 00 of 4 0.93None
Adult carcass4 ± 20 of 4 2.50None
Larval CNS0 ± 00 of 4 0.46None
Larval Salivary gland1 ± 00 of 4 0.49None
Larval midgut2 ± 10 of 4 1.18None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.76None
Larval fat body2 ± 00 of 4 1.20None
Larval trachea0 ± 00 of 4 0.42None
Larval carcass0 ± 00 of 4 0.46None
S2 cells (growing)3 ± 10 of 4 1.96None
Whole fly2 ± 00 of 4



CG14652 (CG34357):

Annotation Number : CG12584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085386
Gbrowse : chr3R:328156-331964 (-) // 100.0 //
Probeset : 1634483_at
Accessions : protein= NP_001097681; /// NP_001097682;, nucleotide= NM_001104211; /// NM_001104212;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0085386.
TRiP has 1 RNAi stocks for FBgn0085386 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 22 of 4 1.20None
Head7 ± 11 of 4 1.30None
Eye5 ± 11 of 4 1.02None
Thoracicoabdominal ganglion9 ± 21 of 4 1.60None
Salivary gland15 ± 32 of 4 2.69None
Crop8 ± 22 of 4 1.50None
Midgut8 ± 21 of 4 1.40None
Tubule8 ± 01 of 4 1.40Up
Hindgut10 ± 12 of 4 1.80Up
Heart8 ± 02 of 4 1.44Up
Fat body13 ± 51 of 4 2.42Up
Ovary5 ± 01 of 4 1.00None
Testis3 ± 10 of 4 0.60None
Male accessory glands11 ± 20 of 4 2.00None
Virgin spermatheca10 ± 02 of 4 1.79Up
Mated spermatheca9 ± 02 of 4 1.64Up
Adult carcass15 ± 11 of 4 2.60Up
Larval CNS6 ± 10 of 4 1.11None
Larval Salivary gland9 ± 31 of 4 1.67None
Larval midgut14 ± 23 of 4 2.59Up
Larval tubule9 ± 11 of 4 1.60Up
Larval hindgut9 ± 00 of 4 1.59Up
Larval fat body13 ± 20 of 4 2.30Up
Larval trachea10 ± 42 of 4 1.75None
Larval carcass10 ± 01 of 4 1.85Up
S2 cells (growing)11 ± 14 of 4 2.00Up
Whole fly5 ± 01 of 4



CG14652 (CG34357):

Annotation Number : CG9783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085386
Gbrowse : chr3R:319125-323168 (-) // 100.0 //
Probeset : 1639753_at
Accessions : protein= NP_001097681; /// NP_001097682;, nucleotide= NM_001104211; /// NM_001104212;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0085386.
Homophila reports that CG9783 is a close match (9e-11) to human gene HHF5;INSR (NP_001073285), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
TRiP has 1 RNAi stocks for FBgn0085386 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 44 of 413.90Up
Head8 ± 10 of 4 3.00Up
Eye2 ± 10 of 4 0.84None
Thoracicoabdominal ganglion23 ± 44 of 4 8.20Up
Salivary gland1 ± 00 of 4 0.61None
Crop2 ± 00 of 4 0.90None
Midgut12 ± 10 of 4 4.20Up
Tubule3 ± 10 of 4 1.10None
Hindgut4 ± 10 of 4 1.60None
Heart0 ± 00 of 4 0.32None
Fat body10 ± 80 of 4 3.52None
Ovary1 ± 00 of 4 0.60None
Testis3 ± 10 of 4 1.10None
Male accessory glands3 ± 00 of 4 1.10None
Virgin spermatheca4 ± 10 of 4 1.61None
Mated spermatheca2 ± 00 of 4 0.89None
Adult carcass9 ± 20 of 4 3.10None
Larval CNS14 ± 32 of 4 4.84Up
Larval Salivary gland6 ± 10 of 4 2.09None
Larval midgut6 ± 20 of 4 2.38None
Larval tubule4 ± 10 of 4 1.50None
Larval hindgut5 ± 10 of 4 1.79None
Larval fat body13 ± 10 of 4 4.70Up
Larval trachea1 ± 00 of 4 0.42None
Larval carcass2 ± 00 of 4 0.97None
S2 cells (growing)67 ± 44 of 423.26Up
Whole fly2 ± 10 of 4



CG14652 (CG34357):

Annotation Number : CG14652
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085386
Gbrowse : chr3R:363455-364151 (-) // 100.0 //
Probeset : 1623610_at
Accessions : protein= NP_001097681; /// NP_001097682;, nucleotide= NM_001104211; /// NM_001104212;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004383 // guanylate cyclase activity // inferr
FlyMine data for FBgn0085386.
TRiP has 1 RNAi stocks for FBgn0085386 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 4.80Up
Head2 ± 10 of 4 2.00None
Eye2 ± 10 of 4 2.50None
Thoracicoabdominal ganglion3 ± 10 of 4 3.00None
Salivary gland4 ± 10 of 4 3.89None
Crop0 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 1.00None
Tubule2 ± 00 of 4 1.90Up
Hindgut0 ± 00 of 4 0.60None
Heart2 ± 11 of 4 2.35None
Fat body3 ± 00 of 4 3.17Up
Ovary1 ± 10 of 4 1.30None
Testis2 ± 10 of 4 2.10None
Male accessory glands7 ± 20 of 4 6.20None
Virgin spermatheca0 ± 00 of 4 0.74None
Mated spermatheca1 ± 00 of 4 1.61None
Adult carcass2 ± 00 of 4 2.20None
Larval CNS1 ± 10 of 4 1.04None
Larval Salivary gland7 ± 20 of 4 6.78None
Larval midgut3 ± 00 of 4 2.98None
Larval tubule1 ± 10 of 4 1.40None
Larval hindgut1 ± 00 of 4 1.52None
Larval fat body1 ± 00 of 4 1.10None
Larval trachea0 ± 00 of 4 0.83None
Larval carcass4 ± 00 of 4 3.48Up
S2 cells (growing)3 ± 01 of 4 3.24None
Whole fly1 ± 00 of 4

Looking for CG14652-RA. 4 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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