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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14655-RA through 18771 annotations produced 1 hits



(CG14655):

Annotation Number : CG14655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037275
Gbrowse : chr3R:603218-606053 (-) // 100.0 //
Probeset : 1627852_at
Accessions : protein= NP_649494;, nucleotide= NM_141237;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037275.
BDGP gene expression has embryonic in situ data for CG14655: 16 pix of staining in 3 body parts.
Homophila reports that CG14655 is a close match (5e-12) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG14655 interacts with CG17051 CG7347 .
TRiP has 1 RNAi stocks for FBgn0037275 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037275 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 0.20Down
Head33 24 of 4 0.90None
Eye10 04 of 4 0.25Down
Thoracicoabdominal ganglion16 34 of 4 0.40Down
Salivary gland18 60 of 4 0.46Down
Crop261 114 of 4 6.60Up
Midgut24 22 of 4 0.60Down
Tubule9 02 of 4 0.30Down
Hindgut80 24 of 4 2.00Up
Heart85 54 of 4 2.17Up
Fat body10 43 of 4 0.26Down
Ovary9 22 of 4 0.20Down
Testis31 34 of 4 0.80None
Male accessory glands39 24 of 4 1.00None
Virgin spermatheca15 24 of 4 0.39Down
Mated spermatheca17 14 of 4 0.43Down
Adult carcass95 74 of 4 2.40Up
Larval CNS11 24 of 4 0.29Down
Larval Salivary gland10 11 of 4 0.26Down
Larval midgut18 12 of 4 0.47Down
Larval tubule11 14 of 4 0.30Down
Larval hindgut61 44 of 4 1.56Up
Larval fat body18 13 of 4 0.50Down
Larval trachea8 43 of 4 0.22Down
Larval carcass119 54 of 4 3.01Up
S2 cells (growing)7 02 of 4 0.18Down
Whole fly39 44 of 4

Looking for CG14655-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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