FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14655-RA through 18771 annotations produced 1 hits

(CG14655):

Annotation Number : CG14655
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037275
Gbrowse : chr3R:603218-606053 (-) // 100.0 //
Probeset : 1627852_at
Accessions : protein= NP_649494;, nucleotide= NM_141237;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0037275.
BDGP gene expression has embryonic in situ data for CG14655: 16 pix of staining in 3 body parts.
Homophila reports that CG14655 is a close match (5e-12) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG14655 interacts with CG17051 CG7347 .
TRiP has 1 RNAi stocks for FBgn0037275 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037275 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	9 ± 0	4 of 4	0.20	Down
Head	33 ± 2	4 of 4	0.90	None
Eye	10 ± 0	4 of 4	0.25	Down
Thoracicoabdominal ganglion	16 ± 3	4 of 4	0.40	Down
Salivary gland	18 ± 6	0 of 4	0.46	Down
Crop	261 ± 11	4 of 4	6.60	Up
Midgut	24 ± 2	2 of 4	0.60	Down
Tubule	9 ± 0	2 of 4	0.30	Down
Hindgut	80 ± 2	4 of 4	2.00	Up
Heart	85 ± 5	4 of 4	2.17	Up
Fat body	10 ± 4	3 of 4	0.26	Down
Ovary	9 ± 2	2 of 4	0.20	Down
Testis	31 ± 3	4 of 4	0.80	None
Male accessory glands	39 ± 2	4 of 4	1.00	None
Virgin spermatheca	15 ± 2	4 of 4	0.39	Down
Mated spermatheca	17 ± 1	4 of 4	0.43	Down
Adult carcass	95 ± 7	4 of 4	2.40	Up
Larval CNS	11 ± 2	4 of 4	0.29	Down
Larval Salivary gland	10 ± 1	1 of 4	0.26	Down
Larval midgut	18 ± 1	2 of 4	0.47	Down
Larval tubule	11 ± 1	4 of 4	0.30	Down
Larval hindgut	61 ± 4	4 of 4	1.56	Up
Larval fat body	18 ± 1	3 of 4	0.50	Down
Larval trachea	8 ± 4	3 of 4	0.22	Down
Larval carcass	119 ± 5	4 of 4	3.01	Up
S2 cells (growing)	7 ± 0	2 of 4	0.18	Down
Whole fly	39 ± 4	4 of 4

Looking for CG14655-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720