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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14659-RA through 18771 annotations produced 1 hits



(CG14659):

Annotation Number : CG14659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037284
Gbrowse : chr3R:656691-656985 (-) // 100.0 //
Probeset : 1631032_at
Accessions : protein= NP_649503;, nucleotide= NM_141246;
FlyMine data for FBgn0037284.
VDRC has 4 RNAi stocks for FBgn0037284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head2 ± 00 of 4 0.30Down
Eye5 ± 00 of 4 0.66None
Thoracicoabdominal ganglion4 ± 10 of 4 0.50None
Salivary gland10 ± 20 of 4 1.27None
Crop4 ± 10 of 4 0.50None
Midgut2 ± 10 of 4 0.40None
Tubule3 ± 00 of 4 0.50Down
Hindgut2 ± 01 of 4 0.40Down
Heart2 ± 00 of 4 0.32Down
Fat body1 ± 00 of 4 0.18Down
Ovary2 ± 10 of 4 0.40Down
Testis137 ± 24 of 417.50Up
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.66None
Mated spermatheca1 ± 00 of 4 0.17Down
Adult carcass4 ± 21 of 4 0.60None
Larval CNS1 ± 20 of 4 0.24Down
Larval Salivary gland7 ± 10 of 4 0.97None
Larval midgut3 ± 10 of 4 0.40None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut4 ± 21 of 4 0.57None
Larval fat body22 ± 93 of 4 2.80None
Larval trachea3 ± 31 of 4 0.50None
Larval carcass9 ± 11 of 4 1.22None
S2 cells (growing)4 ± 20 of 4 0.55None
Whole fly7 ± 12 of 4

Looking for CG14659-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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