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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14661-RA through 18771 annotations produced 1 hits


Annotation Number : CG14661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037288
Gbrowse : chr3R:779329-780127 (-) // 100.0 //
Probeset : 1632923_at
Accessions : protein= NP_649507;, nucleotide= NM_141250;
FlyMine data for FBgn0037288.
VDRC has 1 RNAi stocks for FBgn0037288 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 11 of 4 0.00Down
Head2364 864 of 4 5.70Up
Eye1022 1174 of 4 2.46Up
Thoracicoabdominal ganglion19 92 of 4 0.00Down
Salivary gland14 30 of 4 0.04Down
Crop290 184 of 4 0.70Down
Midgut3 10 of 4 0.00Down
Tubule16 110 of 4 0.00Down
Hindgut616 244 of 4 1.50Up
Heart139 454 of 4 0.33Down
Fat body277 1364 of 4 0.67None
Ovary1 00 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca115 64 of 4 0.28Down
Mated spermatheca93 64 of 4 0.22Down
Adult carcass2929 2124 of 4 7.00Up
Larval CNS5 40 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut6 10 of 4 0.01Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.01Down
Larval fat body9 20 of 4 0.00Down
Larval trachea84 204 of 4 0.20Down
Larval carcass5 20 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.00Down
Whole fly416 244 of 4

Looking for CG14661-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime