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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14667-RA through 18771 annotations produced 1 hits


Annotation Number : CG14667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037317
Gbrowse : chr3R:1200791-1202183 (+) // 100.0 //
Probeset : 1625169_at
Accessions : protein= NP_001014607; /// NP_649532;, nucleotide= NM_001014607; /// NM_141275;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0037317.
BDGP gene expression has embryonic in situ data for CG14667: 4 pix of staining in 1 body parts.
Homophila reports that CG14667 is a close match (3e-12) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG14667 interacts with CG5643 CG8553 CG1809 CG18412 CG3052 CG31624 CG3998 CG4843 CG5920 CG6779 CG7109 CG9184 CG9277 .
TRiP has 1 RNAi stocks for FBgn0037317 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037317 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 54 of 4 1.50Up
Head85 44 of 4 0.80None
Eye79 54 of 4 0.75None
Thoracicoabdominal ganglion117 24 of 4 1.10None
Salivary gland159 34 of 4 1.50Up
Crop99 44 of 4 0.90None
Midgut75 34 of 4 0.70None
Tubule71 24 of 4 0.70Down
Hindgut62 44 of 4 0.60Down
Heart66 44 of 4 0.62Down
Fat body85 34 of 4 0.81None
Ovary234 54 of 4 2.20Up
Testis82 34 of 4 0.80None
Male accessory glands49 14 of 4 0.50Down
Virgin spermatheca87 34 of 4 0.83None
Mated spermatheca91 34 of 4 0.87None
Adult carcass55 54 of 4 0.50Down
Larval CNS137 94 of 4 1.29None
Larval Salivary gland90 64 of 4 0.85None
Larval midgut54 10 of 4 0.51Down
Larval tubule49 44 of 4 0.50Down
Larval hindgut46 54 of 4 0.44Down
Larval fat body90 44 of 4 0.90None
Larval trachea84 54 of 4 0.80None
Larval carcass46 34 of 4 0.44Down
S2 cells (growing)66 34 of 4 0.63Down
Whole fly106 104 of 4

Looking for CG14667-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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