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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1467-RA through 18771 annotations produced 1 hits



syntaxin (Syx16):

Annotation Number : CG1467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031106
Gbrowse : chrX:20263360-20264807 (-) // 100.0 //
Probeset : 1635421_at
Accessions : protein= NP_523420;, nucleotide= NM_078696;
Pathway : 0000139 // Golgi membrane // inferred by curator /// 0005764 // lysosome // inferred from direct assay /// 0005794 // Go
Interpro : 0005484 // SNAP receptor activity // inferred from electronic annotation /// 0005484 // SNAP receptor activity // inferr
FlyMine data for FBgn0031106.
Homophila reports that CG1467 is a close match (7e-42) to human gene (NP_001001433), a gene associated with .
BioGrid reports that CG1467 interacts with CG2198 CG6625 CG7856 CG8228 CG1472 CG15109 CG1893 CG3052 CG31092 CG3918 CG4303 CG4328 CG4966 CG5547 CG5792 CG7109 CG7736 CG9149 CG9394 .
TRiP has 1 RNAi stocks for FBgn0031106 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031106 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 114 of 4 1.80Up
Head118 64 of 4 1.00None
Eye211 84 of 4 1.80Up
Thoracicoabdominal ganglion149 24 of 4 1.30Up
Salivary gland226 184 of 4 1.92Up
Crop113 44 of 4 1.00None
Midgut107 24 of 4 0.90None
Tubule99 24 of 4 0.80Down
Hindgut132 84 of 4 1.10None
Heart82 64 of 4 0.70Down
Fat body61 23 of 4 0.52Down
Ovary192 54 of 4 1.60Up
Testis120 54 of 4 1.00None
Male accessory glands147 44 of 4 1.30Up
Virgin spermatheca71 74 of 4 0.61Down
Mated spermatheca75 74 of 4 0.65Down
Adult carcass77 33 of 4 0.70Down
Larval CNS126 94 of 4 1.07None
Larval Salivary gland180 54 of 4 1.54Up
Larval midgut120 54 of 4 1.03None
Larval tubule134 64 of 4 1.10None
Larval hindgut116 74 of 4 0.99None
Larval fat body63 24 of 4 0.50Down
Larval trachea136 74 of 4 1.16None
Larval carcass104 64 of 4 0.89None
S2 cells (growing)100 54 of 4 0.85None
Whole fly117 94 of 4

Looking for CG1467-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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