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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14672-RA through 18771 annotations produced 1 hits



Spec2 (Spec2):

Annotation Number : CG14672
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0044823
Gbrowse : chr3R:1442375-1449844 (-) // 100.0 //
Probeset : 1632258_s_at
Accessions : protein= NP_730968;, nucleotide= NM_169081; /// NM_169081;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
Interpro : 0005198 // structural molecule activity // inferred from sequence or structural similarity
FlyMine data for FBgn0044823.
BDGP gene expression has embryonic in situ data for Spec2: 18 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0044823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 ± 64 of 4 0.70Down
Head65 ± 44 of 4 0.40Down
Eye70 ± 34 of 4 0.40Down
Thoracicoabdominal ganglion129 ± 54 of 4 0.70Down
Salivary gland299 ± 124 of 4 1.70Up
Crop205 ± 64 of 4 1.20Up
Midgut81 ± 54 of 4 0.50Down
Tubule112 ± 134 of 4 0.60Down
Hindgut138 ± 34 of 4 0.80Down
Heart176 ± 134 of 4 1.01None
Fat body33 ± 74 of 4 0.19Down
Ovary400 ± 44 of 4 2.30Up
Testis229 ± 74 of 4 1.30Up
Male accessory glands167 ± 44 of 4 1.00None
Virgin spermatheca41 ± 14 of 4 0.24Down
Mated spermatheca49 ± 14 of 4 0.28Down
Adult carcass49 ± 24 of 4 0.30Down
Larval CNS210 ± 54 of 4 1.20Up
Larval Salivary gland282 ± 204 of 4 1.61Up
Larval midgut154 ± 104 of 4 0.88None
Larval tubule248 ± 84 of 4 1.40Up
Larval hindgut418 ± 364 of 4 2.38Up
Larval fat body386 ± 234 of 4 2.20Up
Larval trachea127 ± 164 of 4 0.72Down
Larval carcass173 ± 164 of 4 0.99None
S2 cells (growing)179 ± 84 of 4 1.02None
Whole fly175 ± 74 of 4

Looking for CG14672-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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