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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14678-RA through 18771 annotations produced 1 hits



(CG34113):

Annotation Number : CG14678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083949
Gbrowse : chr3R:1710378-1713180 (-) // 100.0 //
Probeset : 1625194_at
Accessions : protein= NP_001036681; /// NP_001036682;, nucleotide= NM_001043216; /// NM_001043217;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0083949.
VDRC has 5 RNAi stocks for FBgn0083949 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.00None
Head1 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.43None
Thoracicoabdominal ganglion4 ± 20 of 4 1.80None
Salivary gland9 ± 50 of 4 4.02None
Crop10 ± 20 of 4 4.60Up
Midgut4 ± 20 of 4 1.70None
Tubule1 ± 00 of 4 0.60Down
Hindgut8 ± 10 of 4 3.50Up
Heart2 ± 10 of 4 1.24None
Fat body7 ± 40 of 4 3.28None
Ovary4 ± 00 of 4 1.80None
Testis4 ± 20 of 4 1.80None
Male accessory glands4 ± 30 of 4 1.90None
Virgin spermatheca3 ± 10 of 4 1.57None
Mated spermatheca6 ± 10 of 4 2.68None
Adult carcass12 ± 20 of 4 5.30Up
Larval CNS4 ± 20 of 4 2.05None
Larval Salivary gland1 ± 00 of 4 0.47None
Larval midgut2 ± 10 of 4 1.21None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut6 ± 10 of 4 2.74None
Larval fat body8 ± 20 of 4 3.60None
Larval trachea3 ± 20 of 4 1.27None
Larval carcass10 ± 10 of 4 4.27Up
S2 cells (growing)2 ± 00 of 4 1.14None
Whole fly2 ± 00 of 4

Looking for CG14678-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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