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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14680-RA through 18771 annotations produced 2 hits



Cyp12e1 (Cyp12e1):

Annotation Number : CG14680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037817
Gbrowse : chr3R:6260521-6262385 (+) // 100.0 //
Probeset : 1637309_a_at
Accessions : protein= NP_650003;, nucleotide= NM_141746;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0037817.
Homophila reports that CG14680 is a close match (1e-11) to human gene (NP_000764), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0037817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 84 of 4 3.10Up
Head147 54 of 4 3.20Up
Eye87 84 of 4 1.89Up
Thoracicoabdominal ganglion249 74 of 4 5.40Up
Salivary gland122 64 of 4 2.64Up
Crop177 54 of 4 3.80Up
Midgut152 34 of 4 3.30Up
Tubule151 104 of 4 3.30Up
Hindgut94 44 of 4 2.00Up
Heart262 44 of 4 5.68Up
Fat body288 174 of 4 6.25Up
Ovary6 11 of 4 0.10Down
Testis14 04 of 4 0.30Down
Male accessory glands32 33 of 4 0.70Down
Virgin spermatheca273 104 of 4 5.92Up
Mated spermatheca222 164 of 4 4.81Up
Adult carcass178 154 of 4 3.90Up
Larval CNS278 214 of 4 6.03Up
Larval Salivary gland430 324 of 4 9.31Up
Larval midgut365 234 of 4 7.91Up
Larval tubule370 104 of 4 8.00Up
Larval hindgut187 134 of 4 4.05Up
Larval fat body542 864 of 411.70Up
Larval trachea569 584 of 412.33Up
Larval carcass391 244 of 4 8.48Up
S2 cells (growing)181 154 of 4 3.93Up
Whole fly46 24 of 4



Cyp12e1 (Cyp12e1):

Annotation Number : CG14680
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037817
Gbrowse : chr3R:6260521-6262385 (+) // 100.0 //
Probeset : 1626022_at
Accessions : protein= NP_650003;, nucleotide= NM_141746;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0037817.
Homophila reports that CG14680 is a close match (1e-11) to human gene (NP_000764), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0037817 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 74 of 4 5.00Up
Head104 44 of 4 3.60Up
Eye42 34 of 4 1.44Up
Thoracicoabdominal ganglion155 34 of 4 5.30Up
Salivary gland69 54 of 4 2.38Up
Crop105 54 of 4 3.60Up
Midgut92 44 of 4 3.20Up
Tubule83 44 of 4 2.90Up
Hindgut85 34 of 4 2.90Up
Heart134 34 of 4 4.61Up
Fat body163 184 of 4 5.60Up
Ovary3 10 of 4 0.10Down
Testis7 04 of 4 0.30Down
Male accessory glands22 13 of 4 0.80Down
Virgin spermatheca83 24 of 4 2.87Up
Mated spermatheca55 14 of 4 1.90Up
Adult carcass122 74 of 4 4.20Up
Larval CNS167 184 of 4 5.74Up
Larval Salivary gland277 194 of 4 9.50Up
Larval midgut175 154 of 4 6.01Up
Larval tubule309 94 of 410.60Up
Larval hindgut130 14 of 4 4.49Up
Larval fat body537 794 of 418.40Up
Larval trachea329 534 of 411.30Up
Larval carcass277 204 of 4 9.53Up
S2 cells (growing)111 74 of 4 3.84Up
Whole fly29 14 of 4

Looking for CG14680-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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