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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1469-RA through 18771 annotations produced 1 hits



Ferritin (Fer2LCH):

Annotation Number : CG1469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015221
Gbrowse : chr3R:26213553-26216306 (+) // 100.0 //
Probeset : 1636186_s_at
Accessions : protein= NP_524802; /// NP_733362; /// NP_733363;, nucleotide= NM_080063; /// NM_170483; /// NM_170484;
Pathway : 0005794 // Golgi apparatus // inferred from direct assay /// 0008043 // intracellular ferritin complex // inferred from
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008198 // ferrous iron binding // inferred from direct as
FlyMine data for FBgn0015221.
BDGP gene expression has embryonic in situ data for Fer2LCH: 18 pix of staining in 12 body parts.
BioGrid reports that CG1469 interacts with CG2216 CG5700 CG6544 CG8235 CG8933 CG3340 .
VDRC has 2 RNAi stocks for FBgn0015221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2438 144 of 4 1.00None
Head3010 844 of 4 1.30Up
Eye4363 834 of 4 1.86Up
Thoracicoabdominal ganglion3016 504 of 4 1.30Up
Salivary gland3318 1174 of 4 1.42Up
Crop2310 434 of 4 1.00None
Midgut5072 384 of 4 2.20Up
Tubule4347 534 of 4 1.90Up
Hindgut2889 404 of 4 1.20Up
Heart6964 4434 of 4 2.97Up
Fat body4851 5864 of 4 2.07Up
Ovary1411 114 of 4 0.60Down
Testis1177 344 of 4 0.50Down
Male accessory glands2434 374 of 4 1.00None
Virgin spermatheca4927 1804 of 4 2.10Up
Mated spermatheca4609 294 of 4 1.97Up
Adult carcass4625 1604 of 4 2.00Up
Larval CNS1957 1374 of 4 0.84Down
Larval Salivary gland1535 514 of 4 0.66Down
Larval midgut5224 1914 of 4 2.23Up
Larval tubule4048 964 of 4 1.70Up
Larval hindgut2234 874 of 4 0.95None
Larval fat body3266 3384 of 4 1.40None
Larval trachea2197 2994 of 4 0.94None
Larval carcass1681 1434 of 4 0.72Down
S2 cells (growing)67 34 of 4 0.03Down
Whole fly2342 934 of 4

Looking for CG1469-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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