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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14694-RA through 18771 annotations produced 1 hits



(CG14694):

Annotation Number : CG14694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037845
Gbrowse : chr3R:6683941-6685525 (-) // 100.0 //
Probeset : 1623916_at
Accessions : protein= NP_650028;, nucleotide= NM_141771;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005542 // folic acid binding // inferred from electronic annotation /// 0008518 // reduced folate carrier activity // i
FlyMine data for FBgn0037845.
Homophila reports that CG14694 is a close match (2e-51) to human gene SLC19A3 (NP_079519), a gene associated with Basal ganglia disease, biotin-responsive, 607483 (3).
BioGrid reports that CG14694 interacts with CG17085 .
VDRC has 1 RNAi stocks for FBgn0037845 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 03 of 4 0.30Down
Head61 24 of 4 1.30None
Eye31 24 of 4 0.64Down
Thoracicoabdominal ganglion13 22 of 4 0.30Down
Salivary gland24 31 of 4 0.49Down
Crop10 10 of 4 0.20Down
Midgut109 74 of 4 2.20Up
Tubule1134 2044 of 423.20Up
Hindgut161 204 of 4 3.30Up
Heart10 11 of 4 0.21Down
Fat body14 40 of 4 0.30Down
Ovary4 11 of 4 0.10Down
Testis31 14 of 4 0.60Down
Male accessory glands29 33 of 4 0.60Down
Virgin spermatheca13 13 of 4 0.27Down
Mated spermatheca14 03 of 4 0.28Down
Adult carcass103 24 of 4 2.10Up
Larval CNS13 34 of 4 0.28Down
Larval Salivary gland21 33 of 4 0.43Down
Larval midgut64 74 of 4 1.31None
Larval tubule32 24 of 4 0.70Down
Larval hindgut10 10 of 4 0.21Down
Larval fat body6 10 of 4 0.10Down
Larval trachea13 21 of 4 0.27Down
Larval carcass12 10 of 4 0.26Down
S2 cells (growing)10 12 of 4 0.22Down
Whole fly49 54 of 4

Looking for CG14694-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime