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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1471-RB through 18771 annotations produced 1 hits



Ceramidase (CDase):

Annotation Number : CG1471
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039774
Gbrowse : chr3R:26285510-26291458 (+) // 100.0 //
Probeset : 1639396_s_at
Accessions : protein= NP_651797; /// NP_733367; /// NP_733368; /// NP_733369; /// NP_733370;, nucleotide= NM_143540; /// NM_170488; /// NM_170489; /// NM_170490; /// NM_170491;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0039774.
BDGP gene expression has embryonic in situ data for CG1471: 12 pix of staining in 3 body parts.
BioGrid reports that CG1471 interacts with CG5884 .
TRiP has 1 RNAi stocks for FBgn0039774 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain543 134 of 411.90Up
Head188 94 of 4 4.10Up
Eye89 54 of 4 1.94Up
Thoracicoabdominal ganglion697 334 of 415.20Up
Salivary gland1 00 of 4 0.03Down
Crop1 00 of 4 0.00Down
Midgut490 334 of 410.70Up
Tubule10 30 of 4 0.20Down
Hindgut12 11 of 4 0.30Down
Heart2 10 of 4 0.06Down
Fat body3 30 of 4 0.07Down
Ovary2 10 of 4 0.10Down
Testis29 34 of 4 0.60None
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.06Down
Mated spermatheca5 20 of 4 0.12Down
Adult carcass27 12 of 4 0.60None
Larval CNS125 224 of 4 2.73Up
Larval Salivary gland6 10 of 4 0.14Down
Larval midgut327 234 of 4 7.13Up
Larval tubule2 00 of 4 0.00Down
Larval hindgut11 11 of 4 0.25Down
Larval fat body122 214 of 4 2.70Up
Larval trachea60 24 of 4 1.32None
Larval carcass15 00 of 4 0.34Down
S2 cells (growing)1218 524 of 426.57Up
Whole fly45 74 of 4

Looking for CG1471-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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