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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14720-RA through 18771 annotations produced 1 hits



(CG14720):

Annotation Number : CG14720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037940
Gbrowse : chr3R:7537500-7538076 (+) // 100.0 //
Probeset : 1636143_at
Accessions : protein= NP_650108;, nucleotide= NM_141851;
FlyMine data for FBgn0037940.
VDRC has 3 RNAi stocks for FBgn0037940 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30Down
Head4 00 of 4 1.20None
Eye4 12 of 4 1.11None
Thoracicoabdominal ganglion2 00 of 4 0.50None
Salivary gland7 30 of 4 1.73None
Crop4 10 of 4 1.00None
Midgut6 10 of 4 1.70None
Tubule3 00 of 4 0.70Down
Hindgut3 00 of 4 1.00None
Heart4 11 of 4 1.07None
Fat body7 50 of 4 1.83None
Ovary2 10 of 4 0.50None
Testis2 00 of 4 0.60None
Male accessory glands2 10 of 4 0.50None
Virgin spermatheca7 21 of 4 1.75None
Mated spermatheca3 10 of 4 0.93None
Adult carcass11 10 of 4 2.70Up
Larval CNS1 10 of 4 0.30Down
Larval Salivary gland4 10 of 4 1.18None
Larval midgut8 21 of 4 2.22None
Larval tubule0 00 of 4 0.20Down
Larval hindgut78 154 of 419.51Up
Larval fat body4 20 of 4 1.10None
Larval trachea1 10 of 4 0.41Down
Larval carcass4 00 of 4 1.20None
S2 cells (growing)2 00 of 4 0.53Down
Whole fly4 00 of 4

Looking for CG14720-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime