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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14743-RA through 18771 annotations produced 1 hits



(CG14743):

Annotation Number : CG14743
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033326
Gbrowse : chr2R:4597902-4600222 (-) // 100.0 //
Probeset : 1638181_at
Accessions : protein= NP_610408;, nucleotide= NM_136564;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0033326.
BioGrid reports that CG14743 interacts with CG17777 .
VDRC has 2 RNAi stocks for FBgn0033326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40Down
Head2 ± 10 of 4 0.30Down
Eye3 ± 10 of 4 0.35Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.40Down
Salivary gland11 ± 30 of 4 1.13None
Crop7 ± 00 of 4 0.70None
Midgut14 ± 10 of 4 1.40Up
Tubule3 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.60None
Heart2 ± 00 of 4 0.25Down
Fat body4 ± 10 of 4 0.41Down
Ovary4 ± 00 of 4 0.50Down
Testis69 ± 34 of 4 6.90Up
Male accessory glands6 ± 10 of 4 0.70None
Virgin spermatheca6 ± 11 of 4 0.60None
Mated spermatheca8 ± 13 of 4 0.88None
Adult carcass9 ± 10 of 4 0.90None
Larval CNS4 ± 20 of 4 0.42Down
Larval Salivary gland6 ± 10 of 4 0.66None
Larval midgut10 ± 30 of 4 1.02None
Larval tubule4 ± 10 of 4 0.50Down
Larval hindgut5 ± 11 of 4 0.52Down
Larval fat body15 ± 22 of 4 1.50None
Larval trachea6 ± 10 of 4 0.67None
Larval carcass7 ± 10 of 4 0.71None
S2 cells (growing)9 ± 11 of 4 0.93None
Whole fly10 ± 12 of 4

Looking for CG14743-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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