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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1475-RB through 18771 annotations produced 1 hits



Ribosomal protein L13A (RpL13A):

Annotation Number : CG1475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037351
Gbrowse : chr3R:1450185-1451679 (+) // 100.0 //
Probeset : 1631739_at
Accessions : protein= NP_649560;, nucleotide= NM_141303;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0037351.
BDGP gene expression has embryonic in situ data for CG1475: 24 pix of staining in 20 body parts.
BioGrid reports that CG1475 interacts with CG3594 CG6459 CG9881 CG15302 CG2224 CG32016 CG3880 CG5174 CG7242 CG8414 CG8843 .
VDRC has 3 RNAi stocks for FBgn0037351 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2134 ± 524 of 4 0.60Down
Head3756 ± 1384 of 4 1.10None
Eye4410 ± 834 of 4 1.29Up
Thoracicoabdominal ganglion2619 ± 644 of 4 0.80Down
Salivary gland8485 ± 2354 of 4 2.47Up
Crop4689 ± 2414 of 4 1.40Up
Midgut4230 ± 504 of 4 1.20Up
Tubule3638 ± 644 of 4 1.10Up
Hindgut4022 ± 934 of 4 1.20Up
Heart5061 ± 3484 of 4 1.48Up
Fat body4410 ± 6164 of 4 1.29Up
Ovary2846 ± 614 of 4 0.80Down
Testis830 ± 164 of 4 0.20Down
Male accessory glands6909 ± 2264 of 4 2.00Up
Virgin spermatheca3706 ± 1344 of 4 1.08None
Mated spermatheca3742 ± 1164 of 4 1.09None
Adult carcass4404 ± 1604 of 4 1.30Up
Larval CNS2150 ± 1384 of 4 0.63Down
Larval Salivary gland4923 ± 1944 of 4 1.44Up
Larval midgut3122 ± 884 of 4 0.91None
Larval tubule3551 ± 964 of 4 1.00None
Larval hindgut3117 ± 444 of 4 0.91None
Larval fat body6142 ± 6684 of 4 1.80Up
Larval trachea4491 ± 1314 of 4 1.31Up
Larval carcass3604 ± 2814 of 4 1.05None
S2 cells (growing)3677 ± 714 of 4 1.07None
Whole fly3429 ± 1894 of 4

Looking for CG1475-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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