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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14772-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG14772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:1308294-1308967 (+) // 100.0 //
Probeset : 1624600_at
Accessions : protein= NP_001096864; /// NP_001162632;, nucleotide= NM_001103394; /// NM_001169161;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0005875 // microtubule associated complex //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from dir


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 20 of 4 5.30None
Head1 ± 00 of 4 1.30None
Eye11 ± 23 of 4 8.07Up
Thoracicoabdominal ganglion3 ± 10 of 4 2.80None
Salivary gland2 ± 00 of 4 1.55None
Crop1 ± 00 of 4 1.00None
Midgut1 ± 00 of 4 1.40None
Tubule2 ± 00 of 4 1.80None
Hindgut2 ± 10 of 4 1.60None
Heart2 ± 10 of 4 1.62None
Fat body1 ± 00 of 4 1.35None
Ovary1 ± 00 of 4 0.90None
Testis3 ± 10 of 4 2.20None
Male accessory glands9 ± 20 of 4 7.10None
Virgin spermatheca2 ± 00 of 4 1.42None
Mated spermatheca2 ± 10 of 4 1.71None
Adult carcass2 ± 00 of 4 2.00None
Larval CNS2 ± 10 of 4 1.82None
Larval Salivary gland4 ± 20 of 4 3.05None
Larval midgut1 ± 00 of 4 1.27None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut3 ± 00 of 4 2.33None
Larval fat body1 ± 00 of 4 1.00None
Larval trachea2 ± 10 of 4 1.58None
Larval carcass6 ± 10 of 4 4.36Up
S2 cells (growing)2 ± 10 of 4 1.45None
Whole fly1 ± 00 of 4

Looking for CG14772-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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