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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1478-RA through 18771 annotations produced 1 hits


defective chorion 2 (Cp36):

Annotation Number : CG1478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000359
Gbrowse : chrX:8373389-8374333 (+) // 100.0 //
Probeset : 1636228_at
Accessions : protein= NP_511087;, nucleotide= NM_078532;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005213 // structural constituent of chorion // inferred from mutant phenotype /// 0005213 // structural constituent of
FlyMine data for FBgn0000359.
BioGrid reports that CG1478 interacts with CG4710 CG7379 CG15422 CG16747 CG17018 CG17271 CG31811 CG31973 CG32068 CG3244 CG3474 CG5278 CG5445 CG5972 CG6779 CG7017 CG7570 CG8204 CG8597 CG8857 CG8947 CG9036 CG9629 .
VDRC has 2 RNAi stocks for FBgn0000359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head6 ± 20 of 4 0.00Down
Eye6 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.00Down
Crop4 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule9 ± 50 of 4 0.00Down
Hindgut26 ± 141 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body10 ± 40 of 4 0.00Down
Ovary3234 ± 1184 of 4 1.20None
Testis5 ± 00 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 20 of 4 0.00Down
Mated spermatheca12 ± 101 of 4 0.00Down
Adult carcass165 ± 1184 of 4 0.10Down
Larval CNS3 ± 30 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut5 ± 31 of 4 0.00Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.00Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)3 ± 10 of 4 0.00Down
Whole fly2616 ± 4644 of 4

Looking for CG1478-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime