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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14782-RA through 18771 annotations produced 1 hits



(CG14782):

Annotation Number : CG14782
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025381
Gbrowse : chrX:1372584-1375455 (+) // 100.0 //
Probeset : 1637328_at
Accessions : protein= NP_569923;, nucleotide= NM_130567;
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0008270 //
FlyMine data for FBgn0025381.
BDGP gene expression has embryonic in situ data for EG:80H7.5: 4 pix of staining in 1 body parts.
Homophila reports that CG14782 is a close match (1e-11) to human gene AAS;FGD1;FGDY (NP_004454), a gene associated with Aarskog-Scott syndrome, 305400 (3);Mental retardation, X-linked nonsyndromic (3).
BioGrid reports that CG14782 interacts with CG31721 CG4216 .
TRiP has 1 RNAi stocks for FBgn0025381 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 ± 54 of 4 0.80Down
Head306 ± 124 of 4 1.00None
Eye250 ± 64 of 4 0.80Down
Thoracicoabdominal ganglion250 ± 24 of 4 0.80Down
Salivary gland530 ± 194 of 4 1.70Up
Crop672 ± 124 of 4 2.20Up
Midgut247 ± 44 of 4 0.80Down
Tubule791 ± 394 of 4 2.50Up
Hindgut384 ± 94 of 4 1.20Up
Heart409 ± 204 of 4 1.31Up
Fat body503 ± 914 of 4 1.61Up
Ovary387 ± 44 of 4 1.20Up
Testis229 ± 44 of 4 0.70Down
Male accessory glands274 ± 64 of 4 0.90Down
Virgin spermatheca879 ± 694 of 4 2.81Up
Mated spermatheca791 ± 94 of 4 2.53Up
Adult carcass375 ± 54 of 4 1.20Up
Larval CNS304 ± 154 of 4 0.97None
Larval Salivary gland368 ± 124 of 4 1.18Up
Larval midgut460 ± 204 of 4 1.47Up
Larval tubule542 ± 94 of 4 1.70Up
Larval hindgut416 ± 114 of 4 1.33Up
Larval fat body197 ± 74 of 4 0.60Down
Larval trachea356 ± 294 of 4 1.14None
Larval carcass258 ± 154 of 4 0.83Down
S2 cells (growing)1410 ± 264 of 4 4.51Up
Whole fly312 ± 54 of 4

Looking for CG14782-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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