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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14791-RB through 18771 annotations produced 1 hits



Rab27 (Rab27):

Annotation Number : CG14791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025382
Gbrowse : chrX:1367908-1370963 (-) // 100.0 //
Probeset : 1629621_a_at
Accessions : protein= NP_569921; /// NP_726743;, nucleotide= NM_130565; /// NM_166888;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0025382.
BDGP gene expression has embryonic in situ data for EG:80H7.4: 6 pix of staining in 1 body parts.
Homophila reports that CG14791 is a close match (1e-12) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
BioGrid reports that CG14791 interacts with CG4167 .
TRiP has 2 RNAi stocks for FBgn0025382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain270 ± 34 of 4 5.90Up
Head60 ± 94 of 4 1.30None
Eye14 ± 23 of 4 0.31Down
Thoracicoabdominal ganglion87 ± 34 of 4 1.90Up
Salivary gland21 ± 30 of 4 0.47Down
Crop10 ± 20 of 4 0.20Down
Midgut14 ± 30 of 4 0.30Down
Tubule14 ± 10 of 4 0.30Down
Hindgut13 ± 20 of 4 0.30Down
Heart3 ± 10 of 4 0.07Down
Fat body8 ± 50 of 4 0.18Down
Ovary81 ± 34 of 4 1.80Up
Testis17 ± 04 of 4 0.40Down
Male accessory glands20 ± 20 of 4 0.40Down
Virgin spermatheca11 ± 10 of 4 0.24Down
Mated spermatheca10 ± 20 of 4 0.22Down
Adult carcass19 ± 30 of 4 0.40Down
Larval CNS87 ± 214 of 4 1.90Up
Larval Salivary gland10 ± 20 of 4 0.23Down
Larval midgut11 ± 10 of 4 0.24Down
Larval tubule13 ± 10 of 4 0.30Down
Larval hindgut9 ± 20 of 4 0.20Down
Larval fat body15 ± 20 of 4 0.30Down
Larval trachea12 ± 40 of 4 0.28Down
Larval carcass17 ± 10 of 4 0.38Down
S2 cells (growing)78 ± 24 of 4 1.72Up
Whole fly45 ± 14 of 4

Looking for CG14791-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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