FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14792-RA through 18771 annotations produced 1 hits

Stubarista (sta):

Annotation Number : CG14792
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003517
Gbrowse : chrX:1375823-1377446 (-) // 100.0 //
Probeset : 1638847_s_at
Accessions : protein= NP_476676; /// NP_476750; /// NP_726744; /// NP_726745;, nucleotide= NM_057328; /// NM_057402; /// NM_166889; /// NM_166890;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome /
FlyMine data for FBgn0003517.
BDGP gene expression has embryonic in situ data for sta: 9 pix of staining in 3 body parts.
BioGrid reports that CG14792 interacts with CG3085 CG4511 CG6459 CG9610 CG6993 CG2986 CG31094 .
VDRC has 4 RNAi stocks for FBgn0003517 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2567 ± 84	4 of 4	0.80	Down
Head	3520 ± 155	4 of 4	1.00	None
Eye	4432 ± 201	4 of 4	1.31	Up
Thoracicoabdominal ganglion	3631 ± 42	4 of 4	1.10	None
Salivary gland	8053 ± 172	4 of 4	2.38	Up
Crop	4794 ± 179	4 of 4	1.40	Up
Midgut	4284 ± 52	4 of 4	1.30	Up
Tubule	3888 ± 101	4 of 4	1.10	Up
Hindgut	3961 ± 69	4 of 4	1.20	Up
Heart	5510 ± 374	4 of 4	1.63	Up
Fat body	5251 ± 656	4 of 4	1.55	Up
Ovary	3207 ± 77	4 of 4	0.90	None
Testis	813 ± 26	4 of 4	0.20	Down
Male accessory glands	8399 ± 268	4 of 4	2.50	Up
Virgin spermatheca	4430 ± 230	4 of 4	1.31	Up
Mated spermatheca	4490 ± 83	4 of 4	1.33	Up
Adult carcass	5100 ± 228	4 of 4	1.50	Up
Larval CNS	2516 ± 150	4 of 4	0.74	Down
Larval Salivary gland	6478 ± 201	4 of 4	1.91	Up
Larval midgut	3705 ± 89	4 of 4	1.09	None
Larval tubule	3560 ± 72	4 of 4	1.10	None
Larval hindgut	3959 ± 40	4 of 4	1.17	Up
Larval fat body	6529 ± 687	4 of 4	1.90	Up
Larval trachea	5436 ± 256	4 of 4	1.60	Up
Larval carcass	4159 ± 262	4 of 4	1.23	None
S2 cells (growing)	4278 ± 65	4 of 4	1.26	Up
Whole fly	3388 ± 113	4 of 4

Looking for CG14792-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720