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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14813-RA through 18771 annotations produced 1 hits



delta-coatomer protein (deltaCOP):

Annotation Number : CG14813
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028969
Gbrowse : chrX:1753175-1755825 (-) // 100.0 //
Probeset : 1628472_at
Accessions : protein= NP_001162642; /// NP_652012;, nucleotide= NM_001169171; /// NM_143755;
Pathway : Golgi to ER // inferred from sequence or structural similarity /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0007436 // larval salivary gland morphogenesis // inferred from mutant
FlyMine data for FBgn0028969.
BDGP gene expression has embryonic in situ data for deltaCOP: 12 pix of staining in 12 body parts.
BioGrid reports that CG14813 interacts with CG4886 CG2865 CG6741 CG6972 .
TRiP has 1 RNAi stocks for FBgn0028969 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain396 ± 144 of 4 1.00None
Head410 ± 174 of 4 1.10None
Eye495 ± 154 of 4 1.31Up
Thoracicoabdominal ganglion417 ± 264 of 4 1.10None
Salivary gland2762 ± 1074 of 4 7.28Up
Crop491 ± 44 of 4 1.30Up
Midgut550 ± 64 of 4 1.50Up
Tubule631 ± 164 of 4 1.70Up
Hindgut489 ± 134 of 4 1.30Up
Heart394 ± 134 of 4 1.04None
Fat body524 ± 214 of 4 1.38Up
Ovary381 ± 104 of 4 1.00None
Testis219 ± 94 of 4 0.60Down
Male accessory glands1704 ± 554 of 4 4.50Up
Virgin spermatheca1048 ± 534 of 4 2.76Up
Mated spermatheca1307 ± 864 of 4 3.45Up
Adult carcass367 ± 114 of 4 1.00None
Larval CNS458 ± 584 of 4 1.21None
Larval Salivary gland2432 ± 334 of 4 6.42Up
Larval midgut705 ± 164 of 4 1.86Up
Larval tubule673 ± 194 of 4 1.80Up
Larval hindgut731 ± 604 of 4 1.93Up
Larval fat body461 ± 504 of 4 1.20None
Larval trachea713 ± 854 of 4 1.88Up
Larval carcass644 ± 394 of 4 1.70Up
S2 cells (growing)895 ± 134 of 4 2.36Up
Whole fly379 ± 114 of 4

Looking for CG14813-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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