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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14814-RB through 18771 annotations produced 1 hits



(CG14814):

Annotation Number : CG14814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023515
Gbrowse : chrX:1756010-1759868 (-) // 100.0 //
Probeset : 1630316_a_at
Accessions : protein= NP_569947; /// NP_726770;, nucleotide= NM_130591; /// NM_166909;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023515.
BDGP gene expression has embryonic in situ data for EG:63B12.6: 20 pix of staining in 9 body parts.
BioGrid reports that CG14814 interacts with CG4494 CG9916 .
TRiP has 1 RNAi stocks for FBgn0023515 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023515 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 04 of 4 0.10Down
Head10 ± 12 of 4 0.10Down
Eye9 ± 11 of 4 0.05Down
Thoracicoabdominal ganglion12 ± 13 of 4 0.10Down
Salivary gland15 ± 10 of 4 0.08Down
Crop9 ± 11 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule11 ± 40 of 4 0.10Down
Hindgut5 ± 11 of 4 0.00Down
Heart11 ± 14 of 4 0.06Down
Fat body24 ± 173 of 4 0.12Down
Ovary801 ± 144 of 4 4.10Up
Testis34 ± 24 of 4 0.20Down
Male accessory glands14 ± 12 of 4 0.10Down
Virgin spermatheca19 ± 24 of 4 0.10Down
Mated spermatheca24 ± 73 of 4 0.12Down
Adult carcass19 ± 32 of 4 0.10Down
Larval CNS128 ± 44 of 4 0.65Down
Larval Salivary gland10 ± 23 of 4 0.05Down
Larval midgut11 ± 11 of 4 0.06Down
Larval tubule13 ± 04 of 4 0.10Down
Larval hindgut13 ± 14 of 4 0.07Down
Larval fat body11 ± 22 of 4 0.10Down
Larval trachea17 ± 44 of 4 0.09Down
Larval carcass13 ± 04 of 4 0.07Down
S2 cells (growing)55 ± 44 of 4 0.28Down
Whole fly197 ± 144 of 4

Looking for CG14814-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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